RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TMCO3Q6UWJ1 677 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 FAM72BQ86X60 149 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 ZNF354CQ86Y25 554 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 CCDC105Q8IYK2 499 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 KATNAL2Q8IYT4 538 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 PHTF2Q8N3S3 785 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 FBXL6Q8N531 539 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 LZTR1Q8N653 840 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 ZNF513Q8N8E2 541 aaPredicted RBP10.35□□□□□ -0.75
USP3-216ENST00000559873 LRRC57Q8N9N7 239 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 DCAF4L2Q8NA75 395 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 TRIM44Q96DX7 344 aaPredicted RBP10.35□□□□□ -0.75
USP3-216ENST00000559873 MYEOVQ96EZ4 313 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 CSPG4P5Q96PW8 444 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 KLHL11Q9NVR0 708 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 TRIM10Q9UDY6 481 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 SALL4Q9UJQ4 1053 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 SLC25A13Q9UJS0 675 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 SLC8A2Q9UPR5 921 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 CAPN6Q9Y6Q1 641 aa10.35□□□□□ -0.75
USP3-216ENST00000559873 MYOFQ9NZM1 2061 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 A0A0A0MRY4 1105 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 KIF5CO60282 957 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 RNF40O75150 1001 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 ZFXP17010 805 aaPredicted RBP10.34□□□□□ -0.75
USP3-216ENST00000559873 ERCC2P18074 760 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 KDELR1P24390 212 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 CTNNA2P26232 953 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 NNMTP40261 264 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 CSKP41240 450 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 IRAK1P51617 712 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 PLK1P53350 603 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 RWDD2BP57060 319 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 YBEYP58557 167 aaPredicted RBP10.34□□□□□ -0.75
USP3-216ENST00000559873 GNA12Q03113 381 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 DPYSL3Q14195 570 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 STARD3Q14849 445 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 GEN1Q17RS7 908 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 TMEM31Q5JXX7 168 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 MBLAC2Q68D91 279 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 NAIF1Q69YI7 327 aaPredicted RBP10.34□□□□□ -0.75
USP3-216ENST00000559873 TXNRD3NBQ6F5E7 133 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 RETSATQ6NUM9 610 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 NLRP14Q86W24 1093 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 CCDC50Q8IVM0 306 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 UMODL1-AS1Q8N2C9 162 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 EXD1Q8NHP7 514 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 FAM71BQ8TC56 605 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 WFDC5Q8TCV5 224 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 CLDN23Q96B33 292 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 ZNF830Q96NB3 372 aaPredicted RBP10.34□□□□□ -0.75
USP3-216ENST00000559873 MAK16Q9BXY0 300 aaKnown RBP10.34□□□□□ -0.75
USP3-216ENST00000559873 MAGEH1Q9H213 219 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 CHRDQ9H2X0 955 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 GOLPH3Q9H4A6 298 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 EPHX3Q9H6B9 360 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 LMAN1LQ9HAT1 526 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 ATP13A1Q9HD20 1204 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 ELOVL2Q9NXB9 296 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 CWC15Q9P013 229 aaKnown RBP10.34□□□□□ -0.75
USP3-216ENST00000559873 CLEC4EQ9ULY5 219 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 HPCAL4Q9UM19 191 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 PLA2G4CQ9UP65 541 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 NEU3Q9UQ49 428 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 STARD13Q9Y3M8 1113 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 HYOU1Q9Y4L1 999 aa10.34□□□□□ -0.75
USP3-216ENST00000559873 CXorf51AA0A1B0GTR3 108 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 ZSCAN5CA6NGD5 496 aaPredicted RBP10.33□□□□□ -0.76
USP3-216ENST00000559873 ARHGAP42A6NI28 874 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 SHISA7A6NL88 538 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 DLL1O00548 723 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 TRIM24O15164 1050 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 ZBTB24O43167 697 aaPredicted RBP10.33□□□□□ -0.76
USP3-216ENST00000559873 GPR37L1O60883 481 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 ZRANB2O95218 330 aaKnown RBP eCLIP10.33□□□□□ -0.76
USP3-216ENST00000559873 PDGFBP01127 241 aaPredicted RBP10.33□□□□□ -0.76
USP3-216ENST00000559873 SRPRAP08240 638 aaKnown RBP10.33□□□□□ -0.76
USP3-216ENST00000559873 DLDP09622 509 aaKnown RBP10.33□□□□□ -0.76
USP3-216ENST00000559873 CHRNB1P11230 501 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 NDST2P52849 883 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 SEC13P55735 322 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 COPS2P61201 443 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 DPYSQ14117 519 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 TFDP2Q14188 446 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 POLD3Q15054 466 aaPredicted RBP10.33□□□□□ -0.76
USP3-216ENST00000559873 FUT11Q495W5 492 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 FSCBQ5H9T9 825 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 EOGTQ5NDL2 527 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 IL31Q6EBC2 164 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 KIAA0907Q7Z7F0 614 aaPredicted RBP10.33□□□□□ -0.76
USP3-216ENST00000559873 METTL3Q86U44 580 aaKnown RBP10.33□□□□□ -0.76
USP3-216ENST00000559873 NT5DC3Q86UY8 548 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 CPNE8Q86YQ8 564 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 RCOR2Q8IZ40 523 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 CHPFQ8IZ52 775 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 KDM1BQ8NB78 822 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 TSC1Q92574 1164 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 TTC17Q96AE7 1141 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 FAF2Q96CS3 445 aa10.33□□□□□ -0.76
USP3-216ENST00000559873 P2RY11Q96G91 374 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms