RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 ARID5BQ14865 1188 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 ARHGAP44Q17R89 818 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 PRAMEF14Q5SWL7 426 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 TRIM65Q6PJ69 517 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 PROSER1Q86XN7 944 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 PASD1Q8IV76 773 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 CCDC117Q8IWD4 279 aaPredicted RBP12.02□□□□□ -0.49
USP3-214ENST00000559718 STK40Q8N2I9 435 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 WDTC1Q8N5D0 677 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 AADATQ8N5Z0 425 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 IGSF8Q969P0 613 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 BTN2A3PQ96KV6 586 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 CPXM1Q96SM3 734 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 PRMT1Q99873 361 aaKnown RBP12.02□□□□□ -0.49
USP3-214ENST00000559718 THAP9Q9H5L6 903 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 COX16Q9P0S2 106 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 AJAP1Q9UKB5 411 aaPredicted RBP12.02□□□□□ -0.49
USP3-214ENST00000559718 NCKAP1Q9Y2A7 1128 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 CEP83Q9Y592 693 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 CACNA1GO43497 2377 aa12.02□□□□□ -0.49
USP3-214ENST00000559718 PKD1L2Q7Z442 2459 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 GOLGA4Q13439 2230 aaKnown RBP12.01□□□□□ -0.49
USP3-214ENST00000559718 EDDM13A0A1B0GTR0 161 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 A0A1W2PPC4 97 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 TARSL2A2RTX5 802 aaKnown RBP12.01□□□□□ -0.49
USP3-214ENST00000559718 KCNU1A8MYU2 1149 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 F5H5T6 163 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 PLK4O00444 970 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 RNASEH1O60930 286 aaKnown RBP12.01□□□□□ -0.49
USP3-214ENST00000559718 GRAP2O75791 330 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 DKK1O94907 266 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 WNT1P04628 370 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 PDGFRAP16234 1089 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 SLC8A1P32418 973 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 CTSKP43235 329 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 IRAK1P51617 712 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 METAP1P53582 386 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 CENPCQ03188 943 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 CAMK4Q16566 473 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 MEA1Q16626 185 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 ADAT2Q7Z6V5 191 aaKnown RBP12.01□□□□□ -0.49
USP3-214ENST00000559718 DEFB106AQ8N104 65 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 CCAR2Q8N163 923 aaKnown RBP12.01□□□□□ -0.49
USP3-214ENST00000559718 KDM1BQ8NB78 822 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 OR52K2Q8NGK3 314 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 PTPRN2Q92932 1015 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 CDC6Q99741 560 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 OMDQ99983 421 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 TRIM62Q9BVG3 475 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 FAM204AQ9H8W3 233 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 SCML1Q9UN30 329 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 ITIH6Q6UXX5 1313 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 FREM2Q5SZK8 3169 aa12.01□□□□□ -0.49
USP3-214ENST00000559718 C10orf142B7Z368 130 aa12□□□□□ -0.49
USP3-214ENST00000559718 VILLO15195 856 aa12□□□□□ -0.49
USP3-214ENST00000559718 MOCS3O95396 460 aa12□□□□□ -0.49
USP3-214ENST00000559718 ERBB2P04626 1255 aa12□□□□□ -0.49
USP3-214ENST00000559718 PNMA6AP0CW24 399 aaPredicted RBP12□□□□□ -0.49
USP3-214ENST00000559718 GGCXP38435 758 aa12□□□□□ -0.49
USP3-214ENST00000559718 CCT8P50990 548 aa12□□□□□ -0.49
USP3-214ENST00000559718 RACK1P63244 317 aaKnown RBP12□□□□□ -0.49
USP3-214ENST00000559718 CDK17Q00537 523 aa12□□□□□ -0.49
USP3-214ENST00000559718 SUZ12Q15022 739 aaKnown RBP12□□□□□ -0.49
USP3-214ENST00000559718 CCDC157Q569K6 752 aa12□□□□□ -0.49
USP3-214ENST00000559718 RNF219Q5W0B1 726 aaPredicted RBP12□□□□□ -0.49
USP3-214ENST00000559718 CXorf57Q6NSI4 855 aaKnown RBP12□□□□□ -0.49
USP3-214ENST00000559718 FBXL22Q6P050 247 aa12□□□□□ -0.49
USP3-214ENST00000559718 FAM183BPQ6ZVS7 135 aa12□□□□□ -0.49
USP3-214ENST00000559718 ENOSF1Q7L5Y1 443 aa12□□□□□ -0.49
USP3-214ENST00000559718 GATAD2AQ86YP4 633 aa12□□□□□ -0.49
USP3-214ENST00000559718 IRF2BP1Q8IU81 584 aa12□□□□□ -0.49
USP3-214ENST00000559718 ATP6V0D2Q8N8Y2 350 aa12□□□□□ -0.49
USP3-214ENST00000559718 C1orf131Q8NDD1 294 aaKnown RBP12□□□□□ -0.49
USP3-214ENST00000559718 OR2T34Q8NGX1 318 aa12□□□□□ -0.49
USP3-214ENST00000559718 MDM1Q8TC05 714 aa12□□□□□ -0.49
USP3-214ENST00000559718 FRS2Q8WU20 508 aa12□□□□□ -0.49
USP3-214ENST00000559718 SLC2A13Q96QE2 648 aa12□□□□□ -0.49
USP3-214ENST00000559718 ACE2Q9BYF1 805 aaPredicted RBP12□□□□□ -0.49
USP3-214ENST00000559718 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12□□□□□ -0.49
USP3-214ENST00000559718 DDIT4Q9NX09 232 aa12□□□□□ -0.49
USP3-214ENST00000559718 ADAMTS1Q9UHI8 967 aa12□□□□□ -0.49
USP3-214ENST00000559718 RWDD2AQ9UIY3 292 aa12□□□□□ -0.49
USP3-214ENST00000559718 ZFYVE26Q68DK2 2539 aa12□□□□□ -0.49
USP3-214ENST00000559718 NYNRINQ9P2P1 1898 aaKnown RBP12□□□□□ -0.49
USP3-214ENST00000559718 TP53BP1Q12888 1972 aaPredicted RBP11.99□□□□□ -0.49
USP3-214ENST00000559718 A0A1B0GTQ1 180 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 FAM170AA1A519 330 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 FAM149AA5PLN7 773 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 LRRC72A6NJI9 287 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 CBX4O00257 560 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 PCDHGA12O60330 932 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 FGFR1OPO95684 399 aaKnown RBP11.99□□□□□ -0.49
USP3-214ENST00000559718 IL1BP01584 269 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 GOT1P17174 413 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 PON1P27169 355 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 DRD3P35462 400 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 GRK6P43250 576 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 ADPRHP54922 357 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 C21orf59P57076 290 aa11.99□□□□□ -0.49
USP3-214ENST00000559718 PPP2CBP62714 309 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms