RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 OFCC1Q8IZS5 231 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 KLHL32Q96NJ5 620 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 CDH19Q9H159 772 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 ATXN3LQ9H3M9 355 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 PFDN4Q9NQP4 134 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 EGFL7Q9UHF1 273 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 RUVBL2Q9Y230 463 aaKnown RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 RBMX2Q9Y388 322 aaKnown RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 PPME1Q9Y570 386 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 BIRC5O15392 142 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 PRKCHP24723 683 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 ZNF132P52740 706 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 MTTPP55157 894 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 CBX3Q13185 183 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 ADGRE1Q14246 886 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 CCDC142Q17RM4 750 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 STYK1Q6J9G0 422 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 C16orf89Q6UX73 402 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 ABHD15Q6UXT9 468 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 ZBTB49Q6ZSB9 765 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 C1orf127Q8N9H9 656 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 KCTD4Q8WVF5 259 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 HTR3CQ8WXA8 447 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 SOX17Q9H6I2 414 aaPredicted RBP11.58□□□□□ -0.56
LDLR-208ENST00000558518 TRPC7Q9HCX4 862 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 GGA3Q9NZ52 723 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 AKT3Q9Y243 479 aa11.58□□□□□ -0.56
LDLR-208ENST00000558518 J3QRK9 145 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 EGFRP00533 1210 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 POLBP06746 335 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 GRK2P25098 689 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 BAG6P46379 1132 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 AGKQ53H12 422 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 PPP1R26Q5T8A7 1209 aaPredicted RBP11.57□□□□□ -0.56
LDLR-208ENST00000558518 GPR107Q5VW38 600 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 CCDC185Q8N715 623 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 FBXL8Q96CD0 374 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 C1orf21Q9H246 121 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 NMRAL1Q9HBL8 299 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 RSL24D1Q9UHA3 163 aaKnown RBP11.57□□□□□ -0.56
LDLR-208ENST00000558518 ZNF180Q9UJW8 692 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 DMTF1Q9Y222 760 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 NFASCO94856 1347 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 FAM159BA6NKW6 160 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 TRIM13O60858 407 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 VAPBO95292 243 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 C2P06681 752 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 MCF2P10911 925 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 ARL1P40616 181 aaPredicted RBP11.57□□□□□ -0.56
LDLR-208ENST00000558518 ESRRGP62508 458 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 PLIN5Q00G26 463 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 DCAF6Q58WW2 860 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 NIPA1Q7RTP0 329 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 PARP8Q8N3A8 854 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 PHF21BQ96EK2 531 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 FAM210AQ96ND0 272 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 MRPS26Q9BYN8 205 aaKnown RBP11.57□□□□□ -0.56
LDLR-208ENST00000558518 NDUFA13Q9P0J0 144 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 EBF1Q9UH73 591 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 PDE4DIPQ5VU43 2346 aa11.57□□□□□ -0.56
LDLR-208ENST00000558518 KPNA7A9QM74 516 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 PLOD2O00469 737 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 ZSCAN9O15535 394 aaPredicted RBP11.56□□□□□ -0.56
LDLR-208ENST00000558518 SEPT6Q14141 434 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 STXBP2Q15833 593 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 FSTL4Q6MZW2 842 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 ZNF280DQ6N043 979 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 TTC33Q6PID6 262 aaPredicted RBP11.56□□□□□ -0.56
LDLR-208ENST00000558518 NUP93Q8N1F7 819 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 NIPA2Q8N8Q9 360 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 FAM110BQ8TC76 370 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 SLC45A3Q96JT2 553 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 CHST12Q9NRB3 414 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 CDYLQ9Y232 598 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 COL14A1Q05707 1796 aaKnown RBP11.56□□□□□ -0.56
LDLR-208ENST00000558518 TRIP11Q15643 1979 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 C2CD4BA6NLJ0 364 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 HOXC6P09630 235 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 IL4RP24394 825 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 GPD2P43304 727 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 NR1H2P55055 460 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 SH3BGRP55822 239 aaPredicted RBP11.56□□□□□ -0.56
LDLR-208ENST00000558518 HNRNPDQ14103 355 aaKnown RBP11.56□□□□□ -0.56
LDLR-208ENST00000558518 VPS72Q15906 364 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 BOLA3Q53S33 107 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 GRAMD4Q6IC98 578 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 SAMD7Q7Z3H4 446 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 GAB3Q8WWW8 586 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 GPRASP2Q96D09 838 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 KIF12Q96FN5 646 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 CERS2Q96G23 380 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 RMND5BQ96G75 393 aaPredicted RBP11.56□□□□□ -0.56
LDLR-208ENST00000558518 CHRAC1Q9NRG0 131 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 STK39Q9UEW8 545 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 ZDHHC2Q9UIJ5 367 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 TLL2Q9Y6L7 1015 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 ABCA3Q99758 1704 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 NUP205Q92621 2012 aa11.56□□□□□ -0.56
LDLR-208ENST00000558518 RGSL1A5PLK6 1076 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms