RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CYLC2Q14093 348 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-231ENST00000557433 FLOT2Q14254 428 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 HSDL1Q3SXM5 330 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 SLC9B1Q4ZJI4 515 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 PIGGQ5H8A4 983 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 PDZD4Q76G19 769 aaPredicted RBP16.63■□□□□ 0.25
SHMT2-231ENST00000557433 TMEM135Q86UB9 458 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 DSELQ8IZU8 1212 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 PGBD4Q96DM1 585 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 HSFY1Q96LI6 401 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 DRC3Q9H069 523 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 RNPEPQ9H4A4 650 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 PLEKHA5Q9HAU0 1116 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 NMRAL1Q9HBL8 299 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 BFARQ9NZS9 450 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 SLC17A6Q9P2U8 582 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 FZD10Q9ULW2 581 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 ZSWIM8A7E2V4 1837 aa16.63■□□□□ 0.25
SHMT2-231ENST00000557433 A0A096LPK6 155 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 SORBS2O94875 1100 aaKnown RBP16.62■□□□□ 0.25
SHMT2-231ENST00000557433 C22orf31O95567 290 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 TFAP2AP05549 437 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 PPARGP37231 505 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-231ENST00000557433 CRADDP78560 199 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 ZNF423Q2M1K9 1284 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 SEL1L3Q68CR1 1132 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 STRA8Q7Z7C7 330 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 ACOT1Q86TX2 421 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 LRRC52Q8N7C0 313 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 CNTD1Q8N815 330 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 ANKRD52Q8NB46 1076 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 LENG1Q96BZ8 264 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-231ENST00000557433 KLRG1Q96E93 195 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 SPATA33Q96N06 139 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 SHCBP1LQ9BZQ2 653 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 UBE2OQ9C0C9 1292 aaKnown RBP16.62■□□□□ 0.25
SHMT2-231ENST00000557433 IL22Q9GZX6 179 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 TIMMDC1Q9NPL8 285 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 OXSMQ9NWU1 459 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 RIMS3Q9UJD0 308 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 LZTS1Q9Y250 596 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 GABBR2O75899 941 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 CABYRO75952 493 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 CRTAMO95727 393 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 ERVK-10P10266 1014 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 DPEP1P16444 411 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 GOT1P17174 413 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 DNAJB2P25686 324 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 PSMB4P28070 264 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 GRM5P41594 1212 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 RPL14P50914 215 aaKnown RBP16.62■□□□□ 0.25
SHMT2-231ENST00000557433 USP4Q13107 963 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 PAFAH1B3Q15102 231 aaKnown RBP16.62■□□□□ 0.25
SHMT2-231ENST00000557433 FSTL4Q6MZW2 842 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 ZYG11AQ6WRX3 759 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 MICALL2Q8IY33 904 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 LRRN4Q8WUT4 740 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 GFM2Q969S9 779 aaKnown RBP16.62■□□□□ 0.25
SHMT2-231ENST00000557433 KIF12Q96FN5 646 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 MPP4Q96JB8 637 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 TSNARE1Q96NA8 513 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 FAM210AQ96ND0 272 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 LGMNQ99538 433 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 BRD8Q9H0E9 1235 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 ZNF385DQ9H6B1 395 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 AP4B1Q9Y6B7 739 aa16.62■□□□□ 0.25
SHMT2-231ENST00000557433 A0A1B0GVG6 124 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 AIM2O14862 343 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 VILLO15195 856 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 MTSS1O43312 755 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 MFSD11O43934 449 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 BCAS2O75934 225 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-231ENST00000557433 GJB1P08034 283 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 FAM58BPP0C7Q3 252 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 ETS2P15036 469 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 ME2P23368 584 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 MATKP42679 507 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 LIPMQ5VYY2 423 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 SNX32Q86XE0 403 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 CCDC185Q8N715 623 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 URGCPQ8TCY9 931 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 EFCAB1Q9HAE3 211 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 ERAP1Q9NZ08 941 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 PPP2R3BQ9Y5P8 575 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 GMEB1Q9Y692 573 aa16.61■□□□□ 0.25
SHMT2-231ENST00000557433 PRSS51A0A1B0GVH4 220 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 NCAM2O15394 837 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 ADCY6O43306 1168 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 ARIH2O95376 493 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 AP2A1O95782 977 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 SRGAP2BP0DMP2 458 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 COL6A2P12110 1019 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 ARF4P18085 180 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 TFE3P19532 575 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-231ENST00000557433 MLH1P40692 756 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 POLD2P49005 469 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 NPY2RP49146 381 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 NR1H2P55055 460 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 APOFQ13790 326 aa16.6■□□□□ 0.25
SHMT2-231ENST00000557433 DCAF4L1Q3SXM0 396 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms