RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SLC38A8A6NNN8 435 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 PIAS1O75925 651 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 IL9RQ01113 521 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 MTA1Q13330 715 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 PSMD5Q16401 504 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 RASIP1Q5U651 963 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 GKAP1Q5VSY0 366 aaPredicted RBP26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 TTC39BQ5VTQ0 682 aaPredicted RBP26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 KCTD11Q693B1 232 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 TAX1BP1Q86VP1 789 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 KLHDC8BQ8IXV7 354 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 PPM1NQ8N819 430 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 DONSONQ9NYP3 566 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 MOCS1Q9NZB8 636 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 MARCH2Q9P0N8 246 aa26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 PPARGC1AQ9UBK2 798 aaKnown RBP26.96■■□□□ 1.91
CCDC88C-205ENST00000553403 ABHD14A-ACY1A0A1B0GW23 586 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 WDR27A2RRH5 827 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 DFFAO00273 331 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 FAM155BO75949 473 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 JCHAINP01591 159 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 MT-ND3P03897 115 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 VIMP08670 466 aaKnown RBP26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 CLTBP09497 229 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 PGAM1P18669 254 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 KRT4P19013 534 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 MGAT1P26572 445 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 TUFMP49411 452 aaKnown RBP26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 PRPSAP1Q14558 356 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 LGSNQ5TDP6 509 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 CTAGE3PQ8IX95 158 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 ZNF683Q8IZ20 524 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 BTN2A3PQ96KV6 586 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 AGAP3Q96P47 875 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 UBE2OQ9C0C9 1292 aaKnown RBP26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 SLC39A8Q9C0K1 460 aa26.95■■□□□ 1.91
CCDC88C-205ENST00000553403 BRCA2P51587 3418 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 GREB1Q4ZG55 1949 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 CACNG3O60359 315 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 ALDH1A2O94788 518 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 ZWINTO95229 277 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 ASMTLO95671 621 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 IGLV3-27P01718 113 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 WDR4P57081 412 aaKnown RBP26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 SESN2P58004 480 aaPredicted RBP26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 SPARCL1Q14515 664 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 C10orf120Q5SQS8 335 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 ZNF276Q8N554 614 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 DIS3LQ8TF46 1054 aaKnown RBP26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 ARNTL2Q8WYA1 636 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 SEC16BQ96JE7 1060 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 VN1R3Q9BXE9 311 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 CASS4Q9NQ75 786 aa26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 PRDM5Q9NQX1 630 aaPredicted RBP26.95■■□□□ 1.9
CCDC88C-205ENST00000553403 ATXN2Q99700 1313 aaKnown RBP26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 ARHGAP42A6NI28 874 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 CXorf49A8MYA2 514 aaPredicted RBP26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 ADAM12O43184 909 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 RHOQP17081 205 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 NFKB1P19838 968 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 KPNA1P52294 538 aaPredicted RBP26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 RING1Q06587 406 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 MS4A13Q5J8X5 152 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 TIGD7Q6NT04 549 aaPredicted RBP26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 ANKLE1Q8NAG6 615 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 GDAP1Q8TB36 358 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 TOP1MTQ969P6 601 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 TTC17Q96AE7 1141 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 CDK5RAP1Q96SZ6 601 aaKnown RBP26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 MLXIPLQ9NP71 852 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 SMYD2Q9NRG4 433 aa26.94■■□□□ 1.9
CCDC88C-205ENST00000553403 COL4A6Q14031 1691 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 AP3B1O00203 1094 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 MATN3O15232 486 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 MAFKO60675 156 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 KRT37O76014 449 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 SNRPAP09012 282 aaKnown RBP26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 ATF6P18850 670 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 CA4P22748 312 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 CASC4Q6P4E1 433 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 PIGWQ7Z7B1 504 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 CACNA2D3Q8IZS8 1091 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 CNPY4Q8N129 248 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 GIPC2Q8TF65 315 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 ZNF689Q96CS4 500 aaPredicted RBP26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 IL12RB2Q99665 862 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 MLPHQ9BV36 600 aaPredicted RBP26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 HSFX1Q9UBD0 423 aa26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 AFF4Q9UHB7 1163 aaKnown RBP26.93■■□□□ 1.9
CCDC88C-205ENST00000553403 IGLV3-10A0A075B6K4 115 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 CCNB1P14635 433 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 OR1D2P34982 312 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 RPA3P35244 121 aaPredicted RBP26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 NAB1Q13506 487 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 KIAA1841Q6NSI8 718 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 ZNF449Q6P9G9 518 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 BANPQ8N9N5 519 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 OVCA2Q8WZ82 227 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 PPP1R2P1Q96PQ5 205 aa26.92■■□□□ 1.9
CCDC88C-205ENST00000553403 ZYG11BQ9C0D3 744 aa26.92■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms