RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 RNASE12Q5GAN4 147 aaKnown RBP5.49□□□□□ -1.53
SCFD1-209ENST00000553280 MTFR2Q6P444 385 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 KIRREL2Q6UWL6 708 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 PXKQ7Z7A4 578 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 SCN4BQ8IWT1 228 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 ADPRHL1Q8NDY3 354 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 ETNPPLQ8TBG4 499 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 NOC3LQ8WTT2 800 aaKnown RBP5.49□□□□□ -1.53
SCFD1-209ENST00000553280 AKAP1Q92667 903 aaKnown RBP eCLIP5.49□□□□□ -1.53
SCFD1-209ENST00000553280 NSUN4Q96CB9 384 aaKnown RBP5.49□□□□□ -1.53
SCFD1-209ENST00000553280 C5orf34Q96MH7 638 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.49□□□□□ -1.53
SCFD1-209ENST00000553280 ITPAQ9BY32 194 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 TRIM31Q9BZY9 425 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 SLITRK6Q9H5Y7 841 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 PRKRIP1Q9H875 184 aaPredicted RBP5.49□□□□□ -1.53
SCFD1-209ENST00000553280 ANKEF1Q9NU02 776 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 HAUS2Q9NVX0 235 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 NKIRAS2Q9NYR9 191 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 SARDHQ9UL12 918 aa5.49□□□□□ -1.53
SCFD1-209ENST00000553280 MAST3O60307 1309 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 CCDC151A5D8V7 595 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 H0YIZ8 118 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 QSOX1O00391 747 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 TNFSF14O43557 240 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 MLYCDO95822 493 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 CYP4B1P13584 511 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 HOXB9P17482 250 aaPredicted RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 NDUFB7P17568 137 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 FPR3P25089 353 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 HOXD12P35452 270 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 ARL3P36405 182 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 MLH1P40692 756 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 RGS2P41220 211 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 STAT6P42226 847 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 HARS2P49590 506 aaKnown RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 COPB1P53618 953 aaKnown RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 SLC37A1P57057 533 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 RPS3AP61247 264 aaKnown RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 UFM1P61960 85 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 WDR5P61964 334 aaKnown RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 DCTN2Q13561 401 aaKnown RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 SH2D4BQ5SQS7 431 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 Q6ZNX1 250 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 RPAP2Q8IXW5 612 aaPredicted RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 NCSTNQ92542 709 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 USP6NLQ92738 828 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 EYA3Q99504 573 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 NPLQ9BXD5 320 aaPredicted RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 HDHD5Q9BXW7 423 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 ADGRE3Q9BY15 652 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 RANBP17Q9H2T7 1088 aaKnown RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 BRF2Q9HAW0 419 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 EIF2B3Q9NR50 452 aaKnown RBP5.48□□□□□ -1.53
SCFD1-209ENST00000553280 TBC1D29Q9UFV1 150 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 VPS28Q9UK41 221 aa5.48□□□□□ -1.53
SCFD1-209ENST00000553280 A0A1W2PQM1 296 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 NPIPB15A6NHN6 443 aaPredicted RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 PRYO14603 147 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 AHCYL1O43865 530 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 ORC4O43929 436 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 PLOD3O60568 738 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 PDE8BO95263 885 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 TTLL1O95922 423 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 SLC3A2P08195 630 aaKnown RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 ADH4P08319 380 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 APEHP13798 732 aaKnown RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 COX7A2P14406 83 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 PKMP14618 531 aaKnown RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 NDUFS1P28331 727 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 GRIA3P42263 894 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 CUL4AQ13619 759 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 BYSLQ13895 437 aaKnown RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 CNGA3Q16281 694 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 AARS2Q5JTZ9 985 aaKnown RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 UBAP2Q5T6F2 1119 aaKnown RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 KCNV1Q6PIU1 500 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 KLHL24Q6TFL4 600 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 GALNT7Q86SF2 657 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 MRGPREQ86SM8 312 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 MON1AQ86VX9 555 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 BRSK2Q8IWQ3 736 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 ADGRF3Q8IZF5 1079 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 LSMEM1Q8N8F7 131 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 EXD3Q8N9H8 876 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 PROKR1Q8TCW9 393 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 LARP4BQ92615 738 aaKnown RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 CHFRQ96EP1 664 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 ZNF845Q96IR2 970 aaPredicted RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 MPHOSPH8Q99549 860 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 CENPOQ9BU64 300 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 TTYH1Q9H313 450 aaPredicted RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 MUC13Q9H3R2 512 aa5.47□□□□□ -1.53
SCFD1-209ENST00000553280 TTC12Q9H892 705 aaPredicted RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 SEPT11Q9NVA2 429 aaKnown RBP5.47□□□□□ -1.53
SCFD1-209ENST00000553280 SETD1BQ9UPS6 1966 aaKnown RBP5.46□□□□□ -1.54
SCFD1-209ENST00000553280 GTPBP1O00178 669 aaKnown RBP5.46□□□□□ -1.54
SCFD1-209ENST00000553280 DSCR3O14972 297 aa5.46□□□□□ -1.54
SCFD1-209ENST00000553280 FYB1O15117 783 aa5.46□□□□□ -1.54
SCFD1-209ENST00000553280 TGFB1I1O43294 461 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms