RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CES4AQ5XG92 561 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 TAF2Q6P1X5 1199 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PTAR1Q7Z6K3 402 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 NT5DC4Q86YG4 428 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 CRLF3Q8IUI8 442 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 C10orf107Q8IVU9 208 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 RIBC1Q8N443 379 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 FCRL2Q96LA5 508 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PPP1R10Q96QC0 940 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 NUDCD1Q96RS6 583 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 NPY6RQ99463 290 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 EPAS1Q99814 870 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 EURLQ9NYK6 297 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 NKX1-2Q9UD57 310 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 RANBP2P49792 3224 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 UNC80Q8N2C7 3258 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ARID2Q68CP9 1835 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PTPRFP10586 1907 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 BCLAF3A2AJT9 711 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 EME2A4GXA9 379 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 NEMP2A6NFY4 417 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 A8MX80 341 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 GPR182O15218 404 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 DUSP11O75319 330 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 RFPL1O75677 317 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 CNTN5O94779 1100 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ZFXP17010 805 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PCSK1P29120 753 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PTPN9P43378 593 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SLC5A3P53794 718 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 CLNS1AP54105 237 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 FCGRTP55899 365 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SLC25A3Q00325 362 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SEMG2Q02383 582 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 LPIN1Q14693 890 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 RASA2Q15283 850 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 RAP1GAP2Q684P5 730 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ESRP1Q6NXG1 681 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 GLB1LQ6UWU2 654 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PACS1Q6VY07 963 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ZNF467Q7Z7K2 595 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SLC41A1Q8IVJ1 513 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 THEM5Q8N1Q8 247 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 TTC39CQ8N584 583 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ATPAF2Q8N5M1 289 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SH3TC2Q8TF17 1288 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 NSMCE1Q8WV22 266 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 C10orf82Q8WW14 230 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 FSD1LQ9BXM9 530 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 DNAI2Q9GZS0 605 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 TASP1Q9H6P5 420 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SUDS3Q9H7L9 328 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 KANSL3Q9P2N6 904 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ZMYND8Q9ULU4 1186 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 MTF2Q9Y483 593 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 KCTD3Q9Y597 815 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 BRCA1P38398 1863 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SLC12A8A0AV02 714 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 HMX2A2RU54 273 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 AURKAO14965 403 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PDE5AO76074 875 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SORBS2O94875 1100 aaKnown RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 HSPA4LO95757 839 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ITGA2BP08514 1039 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 ODC1P11926 461 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 CD1EP15812 388 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 TCN1P20061 433 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 LHX1P48742 406 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 USP46P62068 366 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PDE1CQ14123 709 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PTPRRQ15256 657 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 TAF12Q16514 161 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 CTXN3Q4LDR2 81 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 PRSS55Q6UWB4 352 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 C16orf59Q7L2K0 433 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 DBF4BQ8NFT6 615 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 KCTD4Q8WVF5 259 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SMARCD1Q96GM5 515 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 GLT1D1Q96MS3 346 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 QKIQ96PU8 341 aaKnown RBP eCLIP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 WDR55Q9H6Y2 383 aaPredicted RBP5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SLC38A7Q9NVC3 462 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 SENP1Q9P0U3 644 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 EFR3BQ9Y2G0 817 aa5.72□□□□□ -1.49
LIMA1-215ENST00000552823 A0A096LPK6 155 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PRR5-ARHGAP8B1AHC4 643 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 J3KR12 359 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 TK2O00142 265 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 DAB1O75553 588 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 TCEA3O75764 348 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 UNC5CO95185 931 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 POLBP06746 335 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 KCNE1P15382 129 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 HDCP19113 662 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 WARSP23381 471 aaKnown RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 NME5P56597 212 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 ARHGAP8P85298 464 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 DUSP4Q13115 394 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PDCD2Q16342 344 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 RINLQ6ZS11 566 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms