RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PSMB4P28070 264 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 TYK2P29597 1187 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 RANBP1P43487 201 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 NUMBP49757 651 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 THOP1P52888 689 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 ATXN3P54252 364 aaPredicted RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 MRPS22P82650 360 aaKnown RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 CDKL1Q00532 357 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 MYBPC1Q00872 1141 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 AMHR2Q16671 573 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 NADK2Q4G0N4 442 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 FAM160B1Q5W0V3 765 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 HEATR6Q6AI08 1181 aaKnown RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 LRRC8BQ6P9F7 803 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 METTL7BQ6UX53 244 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 RBM44Q6ZP01 1051 aaKnown RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 TMEM110Q86TL2 294 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 TICAM1Q8IUC6 712 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 MARVELD2Q8N4S9 558 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 DCLK2Q8N568 766 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 COLGALT1Q8NBJ5 622 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 DNERQ8NFT8 737 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PPP4R1Q8TF05 950 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 SLC35F5Q8WV83 523 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 HTR3CQ8WXA8 447 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 NDRG1Q92597 394 aaKnown RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 COPS5Q92905 334 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 ATP2A3Q93084 1043 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 BTBD9Q96Q07 612 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 TBCBQ99426 244 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 AGAP2Q99490 1192 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 GPR20Q99678 358 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 MAF1Q9H063 256 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 RBM38Q9H0Z9 239 aaKnown RBP5.55□□□□□ -1.52
LIMA1-212ENST00000552491 CDH19Q9H159 772 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 EPB41L1Q9H4G0 881 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 CYP3A43Q9HB55 503 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PREBQ9HCU5 417 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 SNX15Q9NRS6 342 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 RNF19AQ9NV58 838 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 IRAK4Q9NWZ3 460 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 ARHGAP26Q9UNA1 814 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 PSMD13Q9UNM6 376 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 AP4E1Q9UPM8 1137 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 LZTS1Q9Y250 596 aa5.55□□□□□ -1.52
LIMA1-212ENST00000552491 A0A0A0MRY4 1105 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 NEMP1O14524 444 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 DENRO43583 198 aaKnown RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ATP9BO43861 1147 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 TOMM70O94826 608 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 IL18RAPO95256 599 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ASLP04424 464 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ATP6V1B1P15313 513 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 DPEP1P16444 411 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ACAT1P24752 427 aaKnown RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 MPSTP25325 297 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PIK3R1P27986 724 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PCSK6P29122 969 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 MAGEA12P43365 314 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 NUDT2P50583 147 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PKNOX1P55347 436 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PITX1P78337 314 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 CEACAM7Q14002 265 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 INSCQ1MX18 579 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 MYLK3Q32MK0 819 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 TMEM198Q66K66 360 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 EFCAB12Q6NXP0 572 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 KLHDC10Q6PID8 442 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 SNX32Q86XE0 403 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ICA1LQ8NDH6 482 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ZFP28Q8NHY6 868 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 FAM81AQ8TBF8 368 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 P2RY11Q96G91 374 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 SPATA13Q96N96 652 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 CDRT15Q96T59 188 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 RTKNQ9BST9 563 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 GATA5Q9BWX5 397 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 NT5C1AQ9BXI3 368 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 C2orf40Q9H1Z8 148 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 DPEP3Q9H4B8 488 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PDZD7Q9H5P4 517 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 GGA3Q9NZ52 723 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ATXN10Q9UBB4 475 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 RIMS3Q9UJD0 308 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ZNF112Q9UJU3 913 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 APPL1Q9UKG1 709 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PHF24Q9UPV7 400 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 A0A0G2JMZ2 1700 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 LRRC37A2A6NM11 1700 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 SSC5DA1L4H1 1573 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ZNF487B1APH4 448 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 RNF103O00237 685 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 SBK3P0C264 359 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 MLNP12872 115 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ARF4P18085 180 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PGAM1P18669 254 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 EPHA3P29320 983 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 PRDX6P30041 224 aa5.54□□□□□ -1.52
LIMA1-212ENST00000552491 ATICP31939 592 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms