RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MTMR4Q9NYA4 1195 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 ADAM21Q9UKJ8 722 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 GDAQ9Y2T3 454 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 TMEM98Q9Y2Y6 226 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 ENTPD2Q9Y5L3 495 aa4.55□□□□□ -1.68
VPS29-205ENST00000548539 CCDC196A0A1B0GTZ2 297 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 NPIPB13A6NJU9 1138 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 NPIPB5A8MRT5 1133 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 NPIPB4C9JG80 1138 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 SMIM22K7EJ46 135 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 SYN3O14994 580 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 TP73O15350 636 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 DHX16O60231 1041 aaKnown RBP4.54□□□□□ -1.68
VPS29-205ENST00000548539 WT1P19544 449 aaPredicted RBP4.54□□□□□ -1.68
VPS29-205ENST00000548539 PRPH2P23942 346 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 PRKCHP24723 683 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 AVPR2P30518 371 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 HOXA4Q00056 320 aaPredicted RBP4.54□□□□□ -1.68
VPS29-205ENST00000548539 FHL1Q13642 323 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 THOC5Q13769 683 aaKnown RBP4.54□□□□□ -1.68
VPS29-205ENST00000548539 GPR68Q15743 365 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 LIPMQ5VYY2 423 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 ACAD10Q6JQN1 1059 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 SLC22A25Q6T423 547 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 C1orf122Q6ZSJ8 110 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 TBC1D1Q86TI0 1168 aaPredicted RBP4.54□□□□□ -1.68
VPS29-205ENST00000548539 ADGRF3Q8IZF5 1079 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 UCMAQ8WVF2 138 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 HDAC2Q92769 488 aaKnown RBP4.54□□□□□ -1.68
VPS29-205ENST00000548539 REPS1Q96D71 796 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 ZBTB10Q96DT7 871 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 RNF125Q96EQ8 232 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 ABHD14AQ9BUJ0 271 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 PHF7Q9BWX1 381 aaPredicted RBP4.54□□□□□ -1.68
VPS29-205ENST00000548539 RNF26Q9BY78 433 aaPredicted RBP4.54□□□□□ -1.68
VPS29-205ENST00000548539 TTYH1Q9H313 450 aaPredicted RBP4.54□□□□□ -1.68
VPS29-205ENST00000548539 JMJD4Q9H9V9 463 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 SLC25A13Q9UJS0 675 aa4.54□□□□□ -1.68
VPS29-205ENST00000548539 TCRBV5S1A1TA0A578 114 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 HMGB1P1B2RPK0 211 aaPredicted RBP4.53□□□□□ -1.68
VPS29-205ENST00000548539 B4E171 279 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 SPTLC2O15270 562 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 CNTN5O94779 1100 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 IGFBP2P18065 325 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 SFPQP23246 707 aaKnown RBP eCLIP4.53□□□□□ -1.68
VPS29-205ENST00000548539 ABCD3P28288 659 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 HOXD12P35452 270 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 TSPAN7P41732 249 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 CASP6P55212 293 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 RPP30P78346 268 aaKnown RBP4.53□□□□□ -1.68
VPS29-205ENST00000548539 SSBP2P81877 361 aaPredicted RBP4.53□□□□□ -1.68
VPS29-205ENST00000548539 ALKBH1Q13686 389 aaKnown RBP4.53□□□□□ -1.68
VPS29-205ENST00000548539 LARS2Q15031 903 aaKnown RBP4.53□□□□□ -1.68
VPS29-205ENST00000548539 UBAP2Q5T6F2 1119 aaKnown RBP4.53□□□□□ -1.68
VPS29-205ENST00000548539 DENND1BQ6P3S1 775 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 TMEM88Q6PEY1 159 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 DHRS13Q6UX07 377 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 VSTM1Q6UX27 236 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 LRRC8DQ7L1W4 858 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 RNF144BQ7Z419 303 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 TBC1D22AQ8WUA7 517 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 RNFT2Q96EX2 444 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 MASTLQ96GX5 879 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 APOPT1Q96IL0 206 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 TRIM31Q9BZY9 425 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 TRIM2Q9C040 744 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 NUAK2Q9H093 628 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 TMX4Q9H1E5 349 aaPredicted RBP4.53□□□□□ -1.68
VPS29-205ENST00000548539 SFXN1Q9H9B4 322 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 ARL8BQ9NVJ2 186 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.53□□□□□ -1.68
VPS29-205ENST00000548539 SEMA5BQ9P283 1151 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 AASSQ9UDR5 926 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 KLQ9UEF7 1012 aa4.53□□□□□ -1.68
VPS29-205ENST00000548539 ZNF521Q96K83 1311 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 SH2D7A6NKC9 451 aaPredicted RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 H3BNC9 293 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 DSCR3O14972 297 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 JTBO76095 146 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 RFPL3SP0C7P2 107 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 ARSAP15289 507 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CD72P21854 359 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CCKBRP32239 447 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 PSMC2P35998 433 aaKnown RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 CCT4P50991 539 aaKnown RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 ZNF84P51523 738 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 GOLGA8FQ08AF8 430 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 DMWDQ09019 674 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 ANXA2RQ3ZCQ2 193 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 GXYLT1Q4G148 440 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 ARL13AQ5H913 290 aaPredicted RBP4.52□□□□□ -1.69
VPS29-205ENST00000548539 SH2D4BQ5SQS7 431 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CCDC30Q5VVM6 783 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 MTFR2Q6P444 385 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CLEC4GQ6UXB4 293 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 RANBP10Q6VN20 620 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 TFAP2DQ7Z6R9 452 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 CHD1LQ86WJ1 897 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 SCN4BQ8IWT1 228 aa4.52□□□□□ -1.69
VPS29-205ENST00000548539 TSPYL6Q8N831 410 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms