RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.75□□□□□ -1.01
VPS29-203ENST00000546588 AFF4Q9UHB7 1163 aaKnown RBP8.75□□□□□ -1.01
VPS29-203ENST00000546588 STAP1Q9ULZ2 295 aa8.75□□□□□ -1.01
VPS29-203ENST00000546588 USP18Q9UMW8 372 aa8.75□□□□□ -1.01
VPS29-203ENST00000546588 SSX2IPQ9Y2D8 614 aa8.75□□□□□ -1.01
VPS29-203ENST00000546588 CORINQ9Y5Q5 1042 aa8.75□□□□□ -1.01
VPS29-203ENST00000546588 NYNRINQ9P2P1 1898 aaKnown RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 C2orf16Q68DN1 1984 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 UQCRHLA0A096LP55 91 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 CFAP69A5D8W1 941 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 FAM86C2PA6NEL3 165 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 YJEFN3A6XGL0 299 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 E7ENQ6 273 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 GOLGA8SH3BPF8 625 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 RNF8O76064 485 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 RTN3O95197 1032 aaPredicted RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 HTR3BO95264 441 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 TRUB2O95900 331 aaKnown RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 UQCRHP07919 91 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 DESP17661 470 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 CYP2F1P24903 491 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 IL1R2P27930 398 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 MIPP30301 263 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 PBX3P40426 434 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 CDKN2BP42772 138 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 FNTAP49354 379 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 TUBP50607 506 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 C19orf57Q0VDD7 668 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 SEMA3BQ13214 749 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 PDK2Q15119 407 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 POU4F3Q15319 338 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 TAF5Q15542 800 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 HADHQ16836 314 aaKnown RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 TFDP3Q5H9I0 405 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 OTOP2Q7RTS6 562 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 TAS1R1Q7RTX1 841 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 TCEAL8Q8IYN2 117 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 C7orf61Q8IZ16 206 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 NOA1Q8NC60 698 aaKnown RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 ZNF461Q8TAF7 563 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 MAIP1Q8WWC4 291 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.74□□□□□ -1.01
VPS29-203ENST00000546588 PLPPR2Q96GM1 343 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 TMEM169Q96HH4 297 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 MS4A14Q96JA4 679 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 RUNDC3BQ96NL0 473 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 ZNF670Q9BS34 389 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 MED10Q9BTT4 135 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 SSBP4Q9BWG4 385 aaPredicted RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 FRMD8P1Q9BZ68 369 aaPredicted RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 MTIF3Q9H2K0 278 aaKnown RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 SMOC2Q9H3U7 446 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 ANKZF1Q9H8Y5 726 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 WDR6Q9NNW5 1121 aaKnown RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 RBM12Q9NTZ6 932 aaKnown RBP8.74□□□□□ -1.01
VPS29-203ENST00000546588 CLIC5Q9NZA1 410 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 CALCOCO1Q9P1Z2 691 aa8.74□□□□□ -1.01
VPS29-203ENST00000546588 hCG_1818297A0A087WSY0 165 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 NT5C1B-RDH14C9J2C7 533 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 KIF1CO43896 1103 aaKnown RBP8.73□□□□□ -1.01
VPS29-203ENST00000546588 LILRB5O75023 590 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 PHF2O75151 1096 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 FGGP02679 453 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 RB1P06400 928 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 POU2F2P09086 479 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 OR4Q2P0C623 313 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 LCP1P13796 627 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 H2AFXP16104 143 aaPredicted RBP8.73□□□□□ -1.01
VPS29-203ENST00000546588 ATF6P18850 670 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 MAOBP27338 520 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 HOXC13P31276 330 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 CHRNA3P32297 505 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 HTR7P34969 479 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 RDXP35241 583 aaKnown RBP8.73□□□□□ -1.01
VPS29-203ENST00000546588 TUFMP49411 452 aaKnown RBP8.73□□□□□ -1.01
VPS29-203ENST00000546588 NDUFV1P49821 464 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 RPL10AP62906 217 aaKnown RBP8.73□□□□□ -1.01
VPS29-203ENST00000546588 NRG1Q02297 640 aaPredicted RBP8.73□□□□□ -1.01
VPS29-203ENST00000546588 LRP8Q14114 963 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 INPP5AQ14642 412 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 C15orf59Q2T9L4 293 aaPredicted RBP8.73□□□□□ -1.01
VPS29-203ENST00000546588 ACBD5Q5T8D3 534 aaPredicted RBP8.73□□□□□ -1.01
VPS29-203ENST00000546588 TXNRD3NBQ6F5E7 133 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 LRFN4Q6PJG9 635 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 SPOCD1Q6ZMY3 1216 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 BBS12Q6ZW61 710 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 ANKS1BQ7Z6G8 1248 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 MON1AQ86VX9 555 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 NUP93Q8N1F7 819 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 ARHGAP18Q8N392 663 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 FIBCD1Q8N539 461 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 PRELID2Q8N945 189 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 FAM172AQ8WUF8 416 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 CFAP57Q96MR6 1250 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 SAMD11Q96NU1 681 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 YME1L1Q96TA2 773 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 PSMB7Q99436 277 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 HERPUD2Q9BSE4 406 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 RHOBTB2Q9BYZ6 727 aa8.73□□□□□ -1.01
VPS29-203ENST00000546588 CCDC86Q9H6F5 360 aaKnown RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms