RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NDFIP2Q9NV92 336 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 BFARQ9NZS9 450 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 NEU3Q9UQ49 428 aa16.7■□□□□ 0.26
COL4A1-204ENST00000543140 A0A1W2PQ45 241 aaPredicted RBP16.69■□□□□ 0.26
COL4A1-204ENST00000543140 A0A1W2PQY0 241 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 E2F8A0AVK6 867 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TPP1O14773 563 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 INPPL1O15357 1258 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 MTSS1O43312 755 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TADA2AO75478 443 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 NQO1P15559 274 aaKnown RBP16.69■□□□□ 0.26
COL4A1-204ENST00000543140 CCR1P32246 355 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 GMPRP36959 345 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 PDE1BQ01064 536 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 CES4AQ5XG92 561 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 KCTD11Q693B1 232 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 C16orf46Q6P387 395 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 CNTD1Q8N815 330 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 CERS2Q96G23 380 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 HHIPL1Q96JK4 782 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TEKT5Q96M29 485 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TMEM237Q96Q45 408 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TRIM62Q9BVG3 475 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 BRD8Q9H0E9 1235 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 STARD7Q9NQZ5 370 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TRHDEQ9UKU6 1024 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 CFAP73A6NFT4 308 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 UNC5CO95185 931 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 CRHR1P34998 444 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TMPRSS15P98073 1019 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 CHI3L2Q15782 390 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TAF1BQ53T94 588 aaPredicted RBP16.69■□□□□ 0.26
COL4A1-204ENST00000543140 ITPRIPL1Q6GPH6 555 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 ZNF449Q6P9G9 518 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 NUDCD3Q8IVD9 361 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TTC9BQ8N6N2 239 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 SPATA22Q8NHS9 363 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 ZSCAN18Q8TBC5 510 aaPredicted RBP16.69■□□□□ 0.26
COL4A1-204ENST00000543140 APBB2Q92870 758 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 MFSD3Q96ES6 412 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 SMOC2Q9H3U7 446 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 MPP6Q9NZW5 540 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 TXNDC16Q9P2K2 825 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 HAO1Q9UJM8 370 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 STK38LQ9Y2H1 464 aa16.69■□□□□ 0.26
COL4A1-204ENST00000543140 C2CD2LO14523 706 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 SOAT2O75908 522 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ITGA2BP08514 1039 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 KRT16P08779 473 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ZNF135P52742 658 aaPredicted RBP16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ARPP19P56211 112 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ATAD1Q8NBU5 361 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 AZIN2Q96A70 460 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ZNF419Q96HQ0 510 aaPredicted RBP16.68■□□□□ 0.26
COL4A1-204ENST00000543140 CAPNS2Q96L46 248 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 AGAP2Q99490 1192 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ZCWPW1Q9H0M4 648 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 LRRC40Q9H9A6 602 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 CASS4Q9NQ75 786 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 CHRAC1Q9NRG0 131 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 VWA8A3KMH1 1905 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 COL4A4P53420 1690 aaPredicted RBP16.68■□□□□ 0.26
COL4A1-204ENST00000543140 OAZ2O95190 189 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 CBX6O95503 412 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 CCNB1P14635 433 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 PAX3P23760 479 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 CNTFP26441 200 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ABCG1P45844 678 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 GATMP50440 423 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 TUBP50607 506 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 USP46P62068 366 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 BST1Q10588 318 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 PDE1CQ14123 709 aaPredicted RBP16.68■□□□□ 0.26
COL4A1-204ENST00000543140 PPM1JQ5JR12 505 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 SPANXN3Q5MJ09 141 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 BRMS1LQ5PSV4 323 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ZCCHC23Q6ZST2 131 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ARHGAP12Q8IWW6 846 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 PLCD3Q8N3E9 789 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 ATPAF2Q8N5M1 289 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 E2F7Q96AV8 911 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 HAPLN3Q96S86 360 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 HCSTQ9UBK5 93 aa16.68■□□□□ 0.26
COL4A1-204ENST00000543140 MOXD2PA6NHM9 499 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 FAM189BP81408 668 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 VARS2Q5ST30 1063 aaKnown RBP16.67■□□□□ 0.26
COL4A1-204ENST00000543140 TIFABQ6ZNK6 161 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 ASRGL1Q7L266 308 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 BEND5Q7L4P6 421 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 C14orf80Q86SX3 495 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.67■□□□□ 0.26
COL4A1-204ENST00000543140 DPF3Q92784 378 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 VAT1Q99536 393 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 SLC39A8Q9C0K1 460 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 KCNK13Q9HB14 408 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 GPBP1L1Q9HC44 474 aaPredicted RBP16.67■□□□□ 0.26
COL4A1-204ENST00000543140 HEY2Q9UBP5 337 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 ZFP69BQ9UJL9 534 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 FAM237BA0A1B0GVD1 139 aa16.67■□□□□ 0.26
COL4A1-204ENST00000543140 GOLGA8TH3BQL2 631 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms