RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 KRT6CP48668 564 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 XRCC4Q13426 336 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 SLC44A2Q8IWA5 706 aaPredicted RBP14.38□□□□□ -0.11
USP3-204ENST00000540797 LRRC34Q8IZ02 419 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 MAGEB18Q96M61 343 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 SPATA13Q96N96 652 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 ATP13A3Q9H7F0 1226 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 TMBIM4Q9HC24 238 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 CACNA2D2Q9NY47 1150 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 CDV3Q9UKY7 258 aaKnown RBP14.38□□□□□ -0.11
USP3-204ENST00000540797 V9GYQ6 96 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 GOLGA8TH3BQL2 631 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 PSMD12O00232 456 aaPredicted RBP14.38□□□□□ -0.11
USP3-204ENST00000540797 SEC24DO94855 1032 aaPredicted RBP14.38□□□□□ -0.11
USP3-204ENST00000540797 PSMB4P28070 264 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 NUDT2P50583 147 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 NME5P56597 212 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 ZNF697Q5TEC3 545 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 FBXO39Q8N4B4 442 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 AHCYL2Q96HN2 611 aaKnown RBP14.38□□□□□ -0.11
USP3-204ENST00000540797 IGLV3-22A0A075B6J6 115 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 SLCO1B7G3V0H7 640 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 EPHB6O15197 1021 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 ONECUT3O60422 494 aaPredicted RBP14.38□□□□□ -0.11
USP3-204ENST00000540797 ATP4AP20648 1035 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 SSTR1P30872 391 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 POM121L1PQ3SYA9 428 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 NRDE2Q9H7Z3 1164 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 HPS4Q9NQG7 708 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 RAD18Q9NS91 495 aa14.38□□□□□ -0.11
USP3-204ENST00000540797 CCNB1P14635 433 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 SERPINB5P36952 375 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 TTC7BQ86TV6 843 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 TDRD5Q8NAT2 981 aaKnown RBP14.37□□□□□ -0.11
USP3-204ENST00000540797 EME1Q96AY2 570 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 RNF157Q96PX1 679 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 NAALADL1Q9UQQ1 740 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 LGR5O75473 907 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 OR4Q2P0C623 313 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 LRRC49Q8IUZ0 686 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 STK40Q8N2I9 435 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 EIF2AQ9BY44 585 aaKnown RBP14.37□□□□□ -0.11
USP3-204ENST00000540797 CATSPERZQ9NTU4 200 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 AHSPQ9NZD4 102 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 VPS51Q9UID3 782 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 ZNF510Q9Y2H8 683 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 LMO7Q8WWI1 1683 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 TM9SF1O15321 606 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 RIPK2O43353 540 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 MAP3K10Q02779 954 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 CCL14Q16627 93 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 GPR158Q5T848 1215 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 N4BP2L1Q5TBK1 243 aaPredicted RBP14.37□□□□□ -0.11
USP3-204ENST00000540797 ANKS6Q68DC2 871 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 SCARA3Q6AZY7 606 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 METTL3Q86U44 580 aaKnown RBP14.37□□□□□ -0.11
USP3-204ENST00000540797 NPAS4Q8IUM7 802 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 ATAD1Q8NBU5 361 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 FBXO22Q8NEZ5 403 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 ADNPQ9H2P0 1102 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 IKZF4Q9H2S9 585 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 ARHGAP28Q9P2N2 729 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 KATNA1O75449 491 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 CPSF4O95639 269 aaKnown RBP14.37□□□□□ -0.11
USP3-204ENST00000540797 PDHA1P08559 390 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 IRAK1P51617 712 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 NR6A1Q15406 480 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 CNGA3Q16281 694 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 VSTM1Q6UX27 236 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 KDM7AQ6ZMT4 941 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 ZNF614Q8N883 585 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 TRMT13Q9NUP7 481 aaKnown RBP14.37□□□□□ -0.11
USP3-204ENST00000540797 H2AFY2Q9P0M6 372 aaPredicted RBP14.37□□□□□ -0.11
USP3-204ENST00000540797 HEY2Q9UBP5 337 aa14.37□□□□□ -0.11
USP3-204ENST00000540797 ATRNL1Q5VV63 1379 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 AOC2O75106 756 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 ADH1CP00326 375 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 IL1BP01584 269 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 POLE2P56282 527 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 FOXR2Q6PJQ5 311 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 NLNQ9BYT8 704 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 ADAM28Q9UKQ2 775 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 A0A096LPK6 155 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 ZSCAN5CA6NGD5 496 aaPredicted RBP14.36□□□□□ -0.11
USP3-204ENST00000540797 OPLAHO14841 1288 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 GOT1P17174 413 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 MARSP56192 900 aaKnown RBP14.36□□□□□ -0.11
USP3-204ENST00000540797 TAF10Q12962 218 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 CYP51A1Q16850 503 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 INSCQ1MX18 579 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 ATP13A4Q4VNC1 1196 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 ANKRD7Q92527 254 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 CDHR5Q9HBB8 845 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 MIEF1Q9NQG6 463 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 CRYL1Q9Y2S2 319 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 PCDHGC5Q9Y5F6 944 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 RPTORQ8N122 1335 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 ZBTB14O43829 449 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 THRAP10827 490 aa14.36□□□□□ -0.11
USP3-204ENST00000540797 TYMPP19971 482 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms