RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 HDAC3O15379 428 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 TPST1O60507 370 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 E2F6O75461 281 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 BCAS2O75934 225 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 PIGNO95427 931 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 CCDC130P13994 396 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 CKMT2P17540 419 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 TGM2P21980 687 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 GTF2A2P52657 109 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 TGFB2P61812 414 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 IKBKEQ14164 716 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 EML3Q32P44 896 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 STXBP5Q5T5C0 1151 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 PRMT6Q96LA8 375 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF341Q9BYN7 854 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 AURKCQ9UQB9 309 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 A0A096LPK6 155 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 PRSS51A0A1B0GVH4 220 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF195O14628 629 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 ONECUT3O60422 494 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 GP5P40197 560 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 GLRBP48167 497 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF143P52747 638 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 GBE1Q04446 702 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 WDR49Q8IV35 697 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 DCLK2Q8N568 766 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 ANKRD36BP1Q96IX9 119 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 TASP1Q9H6P5 420 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 CAB39LQ9H9S4 337 aa13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 JPH1Q9HDC5 661 aaPredicted RBP13.11□□□□□ -0.31
SFSWAP-209ENST00000540469 TRIM38O00635 465 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 HOXA10P31260 410 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 RALGDSQ12967 914 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CCDC14Q49A88 953 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 KCNT2Q6UVM3 1135 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 NAPRTQ6XQN6 538 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 NANOGNBQ7Z5D8 188 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 STRA8Q7Z7C7 330 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 HERC6Q8IVU3 1022 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 SLC4A11Q8NBS3 891 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CYGBQ8WWM9 190 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF668Q96K58 619 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 INO80BQ9C086 356 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 UPF3AQ9H1J1 476 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 VPS45Q9NRW7 570 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 SLC8A2Q9UPR5 921 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 RBMX2Q9Y388 322 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 TRIM17Q9Y577 477 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 J3QRK9 145 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 ENTPD3O75355 529 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 SDC4P31431 198 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CAP2P40123 477 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CCR10P46092 362 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 AP3M2P53677 418 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 DPYSQ14117 519 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 PDK2Q15119 407 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 DLG2Q15700 870 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 GLRA4Q5JXX5 417 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CDR2LQ86X02 465 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 BRSK2Q8IWQ3 736 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 PLD6Q8N2A8 252 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 NETO2Q8NC67 525 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CCNYQ8ND76 341 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 PCDH19Q8TAB3 1148 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 ZNF669Q96BR6 464 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 FBXL8Q96CD0 374 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CORO1BQ9BR76 489 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 GPATCH1Q9BRR8 931 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 GATA5Q9BWX5 397 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 SPATA7Q9P0W8 599 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 NRAPQ86VF7 1730 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 ADAMTSL1Q8N6G6 1762 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 A0A1W2PPW3 197 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 BCLAF3A2AJT9 711 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 NDUFB5O43674 189 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 MICAL2O94851 1124 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CDH3P22223 829 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CYP2F1P24903 491 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 MAP4P27816 1152 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 SPRP35270 261 aaPredicted RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 RPL14P50914 215 aaKnown RBP13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CLCN2P51788 898 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 INSCQ1MX18 579 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 BOLA3Q53S33 107 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 TICAM1Q8IUC6 712 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CPNE9Q8IYJ1 553 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 PQLC3Q8N755 202 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 DNAAF3Q8N9W5 541 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 TRPC4APQ8TEL6 797 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CLEC4DQ8WXI8 215 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 PBXIP1Q96AQ6 731 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 PLEKHA8Q96JA3 519 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 CXorf21Q9HAI6 301 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 MOCS1Q9NZB8 636 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 TLK1Q9UKI8 766 aa13.1□□□□□ -0.31
SFSWAP-209ENST00000540469 FUOMA2VDF0 154 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 K7EPI3 171 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 TIPRLO75663 272 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 POLBP06746 335 aa13.09□□□□□ -0.31
SFSWAP-209ENST00000540469 COL6A2P12110 1019 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms