RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 MEA1Q16626 185 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 TAF1BQ53T94 588 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 E4F1Q66K89 784 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 LAYNQ6UX15 382 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 IRF2BP2Q7Z5L9 587 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 NOP9Q86U38 636 aaKnown RBP12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 CRYBG2Q8N1P7 616 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 PDZD8Q8NEN9 1154 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 SCAMP5Q8TAC9 235 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 TSC1Q92574 1164 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 TTC9Q92623 222 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 CYFIP2Q96F07 1278 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 AGPAT1Q99943 283 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 KLF16Q9BXK1 252 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 ZNF518BQ9C0D4 1074 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 NHEJ1Q9H9Q4 299 aaPredicted RBP12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 ACP6Q9NPH0 428 aa12.98□□□□□ -0.33
CLSTN3-208ENST00000538933 MYO9AB2RTY4 2548 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 TLN1Q9Y490 2541 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 SSU72P8A0A1W2PR75 194 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 ENC1O14682 589 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 CALCAP01258 141 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 MMEP08473 750 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 PLEKP08567 350 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 IRF1P10914 325 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 ACSL1P33121 698 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 DEKP35659 375 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 ACADVLP49748 655 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 IL9RQ01113 521 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 CDR2Q01850 454 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 RHDQ02161 417 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 IFRD2Q12894 506 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 LY6DQ14210 128 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 STARD3Q14849 445 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 SHBQ15464 509 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 SPA17Q15506 151 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 GOLGA7BQ2TAP0 167 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 HES3Q5TGS1 186 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 WDR59Q6PJI9 974 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 TPGS1Q6ZTW0 290 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 ZNF571Q7Z3V5 609 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 CCDC170Q8IYT3 715 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 C12orf29Q8N999 325 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 SLC20A1Q8WUM9 679 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 ZNF606Q8WXB4 792 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 PRCCQ92733 491 aaPredicted RBP12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 FBXO32Q969P5 355 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 KCNK16Q96T55 309 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 CHP1Q99653 195 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 B3GNT5Q9BYG0 378 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 LUC7LQ9NQ29 371 aaKnown RBP12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 ARHGAP20Q9P2F6 1191 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 SLC27A6Q9Y2P4 619 aa12.97□□□□□ -0.33
CLSTN3-208ENST00000538933 A0A1B0GTQ1 180 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 SOWAHDA6NJG2 315 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 CLDN5O00501 218 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 NPC1O15118 1278 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 TSPAN3O60637 253 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 RFPL3O75679 317 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 RTN3O95197 1032 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 CCDC130P13994 396 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 KIF11P52732 1056 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 MAPK8IP2Q13387 824 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 TEAD4Q15561 434 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 GEN1Q17RS7 908 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 TBC1D25Q3MII6 688 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 PPP1R26Q5T8A7 1209 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 HGSNATQ68CP4 663 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 ARHGAP17Q68EM7 881 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 TRIM72Q6ZMU5 477 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 FAM124AQ86V42 546 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 GATAD2AQ86YP4 633 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 PASD1Q8IV76 773 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 CACTIN-AS1Q8N1I8 211 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 MSANTD4Q8NCY6 345 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 SLC2A14Q8TDB8 520 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 BIRC7Q96CA5 298 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 ZNF830Q96NB3 372 aaPredicted RBP12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 NOX5Q96PH1 765 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 CPNE5Q9HCH3 593 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 TSPAN16Q9UKR8 245 aa12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 TEP1Q99973 2627 aaKnown RBP12.96□□□□□ -0.33
CLSTN3-208ENST00000538933 NBPF19A0A087WUL8 3843 aa12.96□□□□□ -0.34
CLSTN3-208ENST00000538933 TMCO5BA8MYB1 307 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 DFNA5O60443 496 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 LDOC1O95751 146 aaPredicted RBP12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 TBX18O95935 607 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 FAM200BP0CF97 657 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 CD27P26842 260 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 ACTN2P35609 894 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 BCAT1P54687 386 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 CNGA2Q16280 664 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 PRAMEF14Q5SWL7 426 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 CCDC122Q5T0U0 273 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 PPP1R2P3Q6NXS1 205 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 PAQR9Q6ZVX9 377 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 FAM35AQ86V20 835 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 TXLNBQ8N3L3 684 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 TMEM35BQ8NCS4 154 aa12.95□□□□□ -0.34
CLSTN3-208ENST00000538933 SNRNP27Q8WVK2 155 aaKnown RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms