RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 IDH3BO43837 385 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 EIF4EBP3O60516 100 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 NOL3O60936 208 aaKnown RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 GCATO75600 419 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 BCAS2O75934 225 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 TOMM70O94826 608 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 NTSR2O95665 410 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 SERPINE1P05121 402 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 LDHBP07195 334 aaKnown RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 WEE2P0C1S8 567 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 GSTT2P0CG29 244 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 GSTT2BP0CG30 244 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 COX4I1P13073 169 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 ITGAXP20702 1163 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 RFC4P35249 363 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 TCF7P36402 384 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 MAGEA6P43360 314 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 NSFP46459 744 aaKnown RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 CPA2P48052 419 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 CEBPAP49715 358 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 ENTPD1P49961 510 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 TMBIM6P55061 237 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 TRAP1Q12931 704 aaKnown RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 PIGHQ14442 188 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 TAZQ16635 292 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 ABCB5Q2M3G0 1257 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 SPATS1Q496A3 300 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 HSF5Q4G112 596 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 KIAA0319Q5VV43 1072 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 SUSD4Q5VX71 490 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 SLX4IPQ5VYV7 408 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 SPOCD1Q6ZMY3 1216 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 BBS12Q6ZW61 710 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 MON1BQ7L1V2 547 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 ARHGEF19Q8IW93 802 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 THNSL1Q8IYQ7 743 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 DEFB107AQ8IZN7 70 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 CENPSQ8N2Z9 138 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 KYQ8NBH2 561 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 RP9Q8TA86 221 aaKnown RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 KBTBD7Q8WVZ9 684 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 ATP2A3Q93084 1043 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 CCDC74AQ96AQ1 378 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 COA7Q96BR5 231 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 PRR11Q96HE9 360 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 CLPTM1LQ96KA5 538 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 DHRS1Q96LJ7 313 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 KREMEN1Q96MU8 473 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 PPP1R10Q96QC0 940 aaKnown RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 ORAI2Q96SN7 254 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 SENP7Q9BQF6 1050 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 EIF2AK1Q9BQI3 630 aaKnown RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 FERMT1Q9BQL6 677 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 MROQ9BYG7 248 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 WDR11Q9BZH6 1224 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 NYXQ9GZU5 481 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 GBA3Q9H227 469 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 MRPL46Q9H2W6 279 aaKnown RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 CLEC4MQ9H2X3 399 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 SOX17Q9H6I2 414 aaPredicted RBP6.86□□□□□ -1.31
USP28-207ENST00000538475 JMJD4Q9H9V9 463 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 MTMR4Q9NYA4 1195 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 DCDC2Q9UHG0 476 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 MID2Q9UJV3 735 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 VAV3Q9UKW4 847 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 DNPEPQ9ULA0 475 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 CCPG1Q9ULG6 757 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 MINPP1Q9UNW1 487 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 ERGIC3Q9Y282 383 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 IFT52Q9Y366 437 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 CDY2AQ9Y6F7 541 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 CDY1Q9Y6F8 540 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 TEX264Q9Y6I9 313 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 IVNS1ABPQ9Y6Y0 642 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 QSER1Q2KHR3 1735 aa6.86□□□□□ -1.31
USP28-207ENST00000538475 MICAL3Q7RTP6 2002 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 hCG_1818297A0A087WSY0 165 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 ARHGEF37A1IGU5 675 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 RGSL1A5PLK6 1076 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 ZNF839A8K0R7 811 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 FAM47E-STBD1D6RA91 191 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 SLCO1B7G3V0H7 640 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 KLHL41O60662 606 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 GLRA3O75311 464 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 TADA2AO75478 443 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 CALB1P05937 261 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 P4HBP07237 508 aaKnown RBP6.85□□□□□ -1.31
USP28-207ENST00000538475 KRT7P08729 469 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 TRIM49P0CI25 452 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 TRIM49CP0CI26 452 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 BMP3P12645 472 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 ATP6V1B1P15313 513 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 ZNF26P17031 533 aaPredicted RBP6.85□□□□□ -1.31
USP28-207ENST00000538475 ME2P23368 584 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 NMT1P30419 496 aaKnown RBP6.85□□□□□ -1.31
USP28-207ENST00000538475 SSTR1P30872 391 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 GNL1P36915 607 aaPredicted RBP6.85□□□□□ -1.31
USP28-207ENST00000538475 GRIA4P48058 902 aa6.85□□□□□ -1.31
USP28-207ENST00000538475 HARS2P49590 506 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms