RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 C5AR1P21730 350 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 ERCC5P28715 1186 aaPredicted RBP13.53□□□□□ -0.24
RTN3-207ENST00000536011 SLC8A1P32418 973 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 NOS2P35228 1153 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 GRK6P43250 576 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 PSMD8P48556 350 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 CCT8P50990 548 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 C21orf59P57076 290 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 RACK1P63244 317 aaKnown RBP13.53□□□□□ -0.24
RTN3-207ENST00000536011 FAM193AP78312 1265 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 NME3Q13232 169 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 EIF4EBP2Q13542 120 aaPredicted RBP13.53□□□□□ -0.24
RTN3-207ENST00000536011 TAF5Q15542 800 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 ACBD5Q5T8D3 534 aaPredicted RBP13.53□□□□□ -0.24
RTN3-207ENST00000536011 OLFML1Q6UWY5 402 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 FAM183BPQ6ZVS7 135 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 MMAAQ8IVH4 418 aaKnown RBP13.53□□□□□ -0.24
RTN3-207ENST00000536011 TMEM35BQ8NCS4 154 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 ZNF397Q8NF99 534 aaPredicted RBP13.53□□□□□ -0.24
RTN3-207ENST00000536011 ADAMTS14Q8WXS8 1223 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 SPAG5Q96R06 1193 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 PRMT1Q99873 361 aaKnown RBP13.53□□□□□ -0.24
RTN3-207ENST00000536011 NDST4Q9H3R1 872 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 MTG2Q9H4K7 406 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 IL21RQ9HBE5 538 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 SLC25A13Q9UJS0 675 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 KLK13Q9UKR3 277 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 ZMIZ1Q9ULJ6 1067 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 STAP1Q9ULZ2 295 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 FREM2Q5SZK8 3169 aa13.53□□□□□ -0.24
RTN3-207ENST00000536011 SPEGQ15772 3267 aa13.52□□□□□ -0.24
RTN3-207ENST00000536011 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.52□□□□□ -0.25
RTN3-207ENST00000536011 A0A1W2PP55 124 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 FAM221BA6H8Z2 402 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 CBFA2T3O75081 653 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 CLDN11O75508 207 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 GRAP2O75791 330 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 GOT1P17174 413 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 CTSOP43234 321 aaPredicted RBP13.52□□□□□ -0.25
RTN3-207ENST00000536011 PLK1P53350 603 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 GALCP54803 685 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 PITX1P78337 314 aaPredicted RBP13.52□□□□□ -0.25
RTN3-207ENST00000536011 BNC1Q01954 994 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 SLC6A3Q01959 620 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 APBA1Q02410 837 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 ZNF177Q13360 481 aaPredicted RBP13.52□□□□□ -0.25
RTN3-207ENST00000536011 KIF19Q2TAC6 998 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 VWA3BQ502W6 1294 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 CT47A1Q5JQC4 288 aaPredicted RBP13.52□□□□□ -0.25
RTN3-207ENST00000536011 FAM46CQ5VWP2 391 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 NCEH1Q6PIU2 408 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 SLC47A2Q86VL8 602 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 FAM71AQ8IYT1 594 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 APCDD1Q8J025 514 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 CHCHD4Q8N4Q1 142 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 WDTC1Q8N5D0 677 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 RHBDD1Q8TEB9 315 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 MS4A3Q96HJ5 214 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 RPL10LQ96L21 214 aaKnown RBP13.52□□□□□ -0.25
RTN3-207ENST00000536011 TUBGCP2Q9BSJ2 902 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 TMEM121BQ9BXQ6 578 aaPredicted RBP13.52□□□□□ -0.25
RTN3-207ENST00000536011 SIX2Q9NPC8 291 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 SNX11Q9Y5W9 270 aa13.52□□□□□ -0.25
RTN3-207ENST00000536011 NUMA1Q14980 2115 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 A0A1W2PPC4 97 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 M0QYT0 321 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 FOXN3O00409 490 aaPredicted RBP13.51□□□□□ -0.25
RTN3-207ENST00000536011 VILLO15195 856 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 YKT6O15498 198 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 SLC7A4O43246 635 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 LSM8O95777 96 aaKnown RBP13.51□□□□□ -0.25
RTN3-207ENST00000536011 F9P00740 461 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 IL1BP01584 269 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 ERBB2P04626 1255 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 IGHV4-34P06331 123 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 MZF1P28698 734 aaPredicted RBP13.51□□□□□ -0.25
RTN3-207ENST00000536011 NUDT1P36639 197 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 SCNN1AP37088 669 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 STK19P49842 368 aaPredicted RBP13.51□□□□□ -0.25
RTN3-207ENST00000536011 CCR5P51681 352 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 AUHQ13825 339 aaKnown RBP13.51□□□□□ -0.25
RTN3-207ENST00000536011 RAPGEF1Q13905 1077 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 GSE1Q14687 1217 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 PTPN20Q4JDL3 420 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 SLC45A4Q5BKX6 768 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 BRMS1LQ5PSV4 323 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 FBXL22Q6P050 247 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 CIR1Q86X95 450 aaPredicted RBP13.51□□□□□ -0.25
RTN3-207ENST00000536011 STK40Q8N2I9 435 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 OR8D1Q8WZ84 308 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 CCDC114Q96M63 670 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 NUP62CLQ9H1M0 184 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 NEUROG2Q9H2A3 272 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 KDM4CQ9H3R0 1056 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.51□□□□□ -0.25
RTN3-207ENST00000536011 SERGEFQ9UGK8 458 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 SLCO3A1Q9UIG8 710 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 VPS28Q9UK41 221 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 VANGL2Q9ULK5 521 aa13.51□□□□□ -0.25
RTN3-207ENST00000536011 DMXL2Q8TDJ6 3036 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms