RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ZNF419Q96HQ0 510 aaPredicted RBP3.1□□□□□ -1.91
CD44-238ENST00000534296 LYZL4Q96KX0 146 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 PIGSQ96S52 555 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 ZNF347Q96SE7 839 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 SF3B5Q9BWJ5 86 aaKnown RBP3.1□□□□□ -1.91
CD44-238ENST00000534296 MRPL44Q9H9J2 332 aaKnown RBP3.1□□□□□ -1.91
CD44-238ENST00000534296 OBP2BQ9NPH6 170 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 RNF146Q9NTX7 359 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 ZBTB40Q9NUA8 1239 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 FNIP2Q9P278 1114 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 CNTN6Q9UQ52 1028 aa3.1□□□□□ -1.91
CD44-238ENST00000534296 COPG1Q9Y678 874 aaKnown RBP3.1□□□□□ -1.91
CD44-238ENST00000534296 LMTK3Q96Q04 1460 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 IGKV2D-30A0A075B6S6 120 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 SAC3D1A6NKF1 404 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 LGALS16A8MUM7 142 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 LACTBL1A8MY62 500 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 FOXO6A8MYZ6 492 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 ZNF814B7Z6K7 855 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 M0QYT0 321 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 HNRNPRO43390 633 aaKnown RBP3.09□□□□□ -1.91
CD44-238ENST00000534296 EPN2O95208 641 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 HLA-DQA2P01906 255 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 KLKB1P03952 638 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 CBSLP0DN79 551 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 SERPINB3P29508 390 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 SERPINA4P29622 427 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 CBSP35520 551 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 CHKAP35790 457 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 POLD2P49005 469 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 MCM2P49736 904 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 LEXMQ3ZCV2 418 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 TRIM60Q495X7 471 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 KIAA1755Q5JYT7 1200 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 ZNF549Q6P9A3 640 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 C9orf47Q6ZRZ4 202 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 SLC44A2Q8IWA5 706 aaPredicted RBP3.09□□□□□ -1.91
CD44-238ENST00000534296 CPXCR1Q8N123 301 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 WIPF2Q8TF74 440 aaPredicted RBP3.09□□□□□ -1.91
CD44-238ENST00000534296 STYXQ8WUJ0 223 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 TMEM174Q8WUU8 243 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 C3orf49Q96BT1 292 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 MCRS1Q96EZ8 462 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 RMDN3Q96TC7 470 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 HERPUD2Q9BSE4 406 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 TMEM204Q9BSN7 226 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 SORBS1Q9BX66 1292 aaKnown RBP3.09□□□□□ -1.91
CD44-238ENST00000534296 WDR12Q9GZL7 423 aaKnown RBP3.09□□□□□ -1.91
CD44-238ENST00000534296 MYLK2Q9H1R3 596 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 PDE11AQ9HCR9 933 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 HIF1ANQ9NWT6 349 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 DACT1Q9NYF0 836 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.09□□□□□ -1.91
CD44-238ENST00000534296 SLC4A4Q9Y6R1 1079 aa3.09□□□□□ -1.91
CD44-238ENST00000534296 C11orf97A0A1B0GVM6 126 aaPredicted RBP3.08□□□□□ -1.92
CD44-238ENST00000534296 RPS10-NUDT3A0A1W2PQS6 291 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 CXorf65A6NEN9 183 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 KCNJ18B7U540 433 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 H0YGN5 161 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 MDM4O15151 490 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 SPTLC2O15270 562 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 IRAK2O43187 625 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 SEPT4O43236 478 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 KIF1CO43896 1103 aaKnown RBP3.08□□□□□ -1.92
CD44-238ENST00000534296 KAT7O95251 611 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 TNFRSF6BO95407 300 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 CSTBP04080 98 aaKnown RBP3.08□□□□□ -1.92
CD44-238ENST00000534296 TGFB3P10600 412 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 CHRNB1P11230 501 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 HOXB9P17482 250 aaPredicted RBP3.08□□□□□ -1.92
CD44-238ENST00000534296 GSTM2P28161 218 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 SLC16A2P36021 539 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 CDKN2AP42771 156 aaKnown RBP3.08□□□□□ -1.92
CD44-238ENST00000534296 CCT5P48643 541 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 CYP2J2P51589 502 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 ADPRHP54922 357 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 P2RX3P56373 397 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 FOXL2P58012 376 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 ALKBH1Q13686 389 aaKnown RBP3.08□□□□□ -1.92
CD44-238ENST00000534296 PRKG1Q13976 671 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 DHX8Q14562 1220 aaKnown RBP3.08□□□□□ -1.92
CD44-238ENST00000534296 KRT72Q14CN4 511 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 ARL13AQ5H913 290 aaPredicted RBP3.08□□□□□ -1.92
CD44-238ENST00000534296 HMBOX1Q6NT76 420 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 PARM1Q6UWI2 310 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 KDELC2Q7Z4H8 507 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 CCDC25Q86WR0 208 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 CERS3Q8IU89 383 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 SMAP1Q8IYB5 467 aaPredicted RBP3.08□□□□□ -1.92
CD44-238ENST00000534296 SLC25A41Q8N5S1 370 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 PAF1Q8N7H5 531 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 ATG16L2Q8NAA4 619 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 SLC2A12Q8TD20 617 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 PPM1EQ8WY54 764 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 ATP2A3Q93084 1043 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 EME1Q96AY2 570 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 MARK4Q96L34 752 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 MECRQ9BV79 373 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 IFT27Q9BW83 186 aa3.08□□□□□ -1.92
CD44-238ENST00000534296 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms