RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NLRC4Q9NPP4 1024 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 PLCB1Q9NQ66 1216 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 SNX15Q9NRS6 342 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 TRNAU1APQ9NX07 287 aaKnown RBP4.49□□□□□ -1.69
CD44-235ENST00000532339 COG5Q9UP83 839 aa4.49□□□□□ -1.69
CD44-235ENST00000532339 PFASO15067 1338 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 ASPMQ8IZT6 3477 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 DMDP11532 3685 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 TAF1P21675 1872 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 CCL15-CCL14A0A0B4J2E2 113 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 LOC102723971A0A1B0GUV8 181 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 CFAP69A5D8W1 941 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 FCHO1O14526 889 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 RGS10O43665 173 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 CREB3O43889 395 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 RNF8O76064 485 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 RASAL1O95294 804 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 MT-CO3P00414 261 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 MYF5P13349 255 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 ZKSCAN1P17029 563 aaPredicted RBP4.48□□□□□ -1.69
CD44-235ENST00000532339 KLRC1P26715 233 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 CCL15Q16663 113 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 Q4G0T1 1027 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 FAM83BQ5T0W9 1011 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 CACHD1Q5VU97 1274 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 ERAP2Q6P179 960 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 C17orf99Q6UX52 265 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 MRPL10Q7Z7H8 261 aaKnown RBP4.48□□□□□ -1.69
CD44-235ENST00000532339 FAM186BQ8IYM0 893 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 OR56A3Q8NH54 315 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 BRI3BPQ8WY22 251 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 MAML1Q92585 1016 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 ZC3H10Q96K80 434 aaKnown RBP4.48□□□□□ -1.69
CD44-235ENST00000532339 TBCBQ99426 244 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 VN1R3Q9BXE9 311 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 BTBD1Q9H0C5 482 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.48□□□□□ -1.69
CD44-235ENST00000532339 NUP62CLQ9H1M0 184 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 MYOZ2Q9NPC6 264 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 TRIM36Q9NQ86 728 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 TERF2IPQ9NYB0 399 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 DNMT3BQ9UBC3 853 aaKnown RBP4.48□□□□□ -1.69
CD44-235ENST00000532339 RTL9Q8NET4 1388 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 ZSWIM8A7E2V4 1837 aa4.48□□□□□ -1.69
CD44-235ENST00000532339 FNDC1Q4ZHG4 1894 aaPredicted RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 ABHD14A-ACY1A0A1B0GW23 586 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 TRIM43BA6NCK2 446 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 ISM1B1AKI9 464 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 RASA4BC9J798 803 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 PYCARD-AS1I3L0S3 204 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 SOCS2O14508 198 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 CD3EAPO15446 510 aaKnown RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 RASA4O43374 803 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 MGEA5O60502 916 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 FGBP02675 491 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 UQCRC1P31930 480 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 PIK3CBP42338 1070 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 PRIM2P49643 509 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 COPB1P53618 953 aaKnown RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 TIRAPP58753 221 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 GHRHRQ02643 423 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 LMAN2Q12907 356 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 IFIT5Q13325 482 aaKnown RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 LRRC26Q2I0M4 334 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 GRAMD1BQ3KR37 738 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 PLEKHO1Q53GL0 409 aaPredicted RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 AWAT2Q6E213 333 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 TMEM65Q6PI78 240 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 ZDHHC24Q6UX98 284 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 ASCL5Q7RTU5 278 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 TECPR1Q7Z6L1 1165 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 MICU3Q86XE3 530 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 ENAHQ8N8S7 591 aaPredicted RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 AGBL3Q8NEM8 1001 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 VPS37AQ8NEZ2 397 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 OSR1Q8TAX0 266 aaPredicted RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 ZNF398Q8TD17 642 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 TRIM43Q96BQ3 446 aaPredicted RBP4.47□□□□□ -1.69
CD44-235ENST00000532339 APIPQ96GX9 242 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 SACM1LQ9NTJ5 587 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 PI4KBQ9UBF8 816 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 OGDHLQ9ULD0 1010 aa4.47□□□□□ -1.69
CD44-235ENST00000532339 NIP7Q9Y221 180 aaKnown RBP eCLIP4.47□□□□□ -1.69
CD44-235ENST00000532339 LRRC37A2A6NM11 1700 aa4.46□□□□□ -1.69
CD44-235ENST00000532339 USP9XQ93008 2570 aaPredicted RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 ABCC12Q96J65 1359 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 DCXO43602 365 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 TMPRSS11DO60235 418 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 RASSF9O75901 435 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 SETSIPP0DME0 302 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 APEHP13798 732 aaKnown RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 BRAFP15056 766 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 CREB1P16220 341 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 TRAPPC10P48553 1259 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 DIO1P49895 249 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 CASP5P51878 434 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 POLGP54098 1239 aaPredicted RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 SUMO3P55854 103 aaPredicted RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms