RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 UNC45BQ8IWX7 931 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 SLC35F6Q8N357 371 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 IL22RA1Q8N6P7 574 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 UBL4BQ8N7F7 174 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 KIAA1958Q8N8K9 716 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 KIF18AQ8NI77 898 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 DQX1Q8TE96 717 aaKnown RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 FAM172AQ8WUF8 416 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 TEKT4Q8WW24 435 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 SMG7Q92540 1137 aaKnown RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 NTAN1Q96AB6 310 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 SCARF2Q96GP6 870 aaPredicted RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 SLC39A13Q96H72 371 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 PBKQ96KB5 322 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 SERPINB11Q96P15 392 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 GCNAQ96QF7 691 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 HAPLN3Q96S86 360 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 TBCBQ99426 244 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 TLR10Q9BXR5 811 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 ADAM19Q9H013 955 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 OSBPL2Q9H1P3 480 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 S1PR5Q9H228 398 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 ATXN3LQ9H3M9 355 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 LIN7BQ9HAP6 207 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 PRDM16Q9HAZ2 1276 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 ZNF334Q9HCZ1 680 aaPredicted RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 DDX56Q9NY93 547 aaKnown RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.67□□□□□ -1.18
CD44-228ENST00000528455 MARCH2Q9P0N8 246 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 RNF14Q9UBS8 474 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 DNAI1Q9UI46 699 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 USP15Q9Y4E8 981 aaPredicted RBP7.67□□□□□ -1.18
CD44-228ENST00000528455 CAPN6Q9Y6Q1 641 aa7.67□□□□□ -1.18
CD44-228ENST00000528455 OBSL1O75147 1896 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 MYO16Q9Y6X6 1858 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 TMEM110-MUSTN1A8MSY1 372 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 KCNU1A8MYU2 1149 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 MDM4O15151 490 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 IRAK2O43187 625 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 COCHO43405 550 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 SPOPO43791 374 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 PRPSAP2O60256 369 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 IGLV3-27P01718 113 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 MYL4P12829 197 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 TCP1P17987 556 aaKnown RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 CTNNA1P35221 906 aaKnown RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 CETN2P41208 172 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 HCAR3P49019 387 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 SULT1E1P49888 294 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 ZNF135P52742 658 aaPredicted RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 RWDD2BP57060 319 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 TBX4P57082 545 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 SLC7A9P82251 487 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 RBM10P98175 930 aaKnown RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 NME3Q13232 169 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 GRM2Q14416 872 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 PDK2Q15119 407 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 CDO1Q16878 200 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 ARHGAP15Q53QZ3 475 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 PRSS36Q5K4E3 855 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 TMC5Q6UXY8 1006 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 SYT10Q6XYQ8 523 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 VSIG1Q86XK7 387 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 KATNAL2Q8IYT4 538 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 CACTIN-AS1Q8N1I8 211 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 C12orf76Q8N812 135 aaPredicted RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 EXD1Q8NHP7 514 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 FAM71BQ8TC56 605 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 SUSD6Q92537 303 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 C16orf45Q96MC5 204 aaPredicted RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 WDR24Q96S15 920 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 CYP2S1Q96SQ9 504 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 NAPGQ99747 312 aaPredicted RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 PHF7Q9BWX1 381 aaPredicted RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 SLC46A2Q9BY10 475 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 DCLK3Q9C098 648 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 RETREG1Q9H6L5 497 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 TASP1Q9H6P5 420 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 CCSER2Q9H7U1 834 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 WDR6Q9NNW5 1121 aaKnown RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 HCFC1R1Q9NWW0 138 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 DDIT4Q9NX09 232 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 ARHGEF38Q9NXL2 777 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 GDE1Q9NZC3 331 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 CALCOCO1Q9P1Z2 691 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 SFMBT1Q9UHJ3 866 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 EFR3BQ9Y2G0 817 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 MRPS23Q9Y3D9 190 aaKnown RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 SAR1BQ9Y6B6 198 aa7.66□□□□□ -1.18
CD44-228ENST00000528455 ZFP37Q9Y6Q3 630 aaPredicted RBP7.66□□□□□ -1.18
CD44-228ENST00000528455 TRAV19A0A0A6YYK7 116 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 SLC12A8A0AV02 714 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 C2orf78A6NCI8 922 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 METTL12A8MUP2 240 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 ZNF487B1APH4 448 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 LOC730098B7Z3J9 87 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 DDX3YO15523 660 aaKnown RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 MOSPD3O75425 235 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 TADA3O75528 432 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 FTCDO95954 541 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms