RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 CCDC186Q7Z3E2 898 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ARHGAP30Q7Z6I6 1101 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PXKQ7Z7A4 578 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLFN11Q7Z7L1 901 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GLRX5Q86SX6 157 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM110Q86TL2 294 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC9B2Q86UD5 537 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHD1LQ86WJ1 897 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TTC30AQ86WT1 665 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MICU3Q86XE3 530 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NBPF5PQ86XG9 351 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP1R3BQ86XI6 285 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GAS2L3Q86XJ1 694 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PROSER1Q86XN7 944 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 COL23A1Q86Y22 540 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDSS2Q86YH6 399 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RASGRP3Q8IV61 690 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR63Q8IWG1 891 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCN4BQ8IWT1 228 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SUGP2Q8IX01 1082 aaKnown RBP eCLIP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RHOT1Q8IXI2 618 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SRRM1Q8IYB3 904 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 THNSL1Q8IYQ7 743 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC170Q8IYT3 715 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D21Q8IYX1 336 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPR135Q8IZ08 494 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADGRF2Q8IZF7 708 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAML2Q8IZL2 1156 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF619Q8N2I2 560 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM132CQ8N3T6 1108 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LNX2Q8N448 690 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC44A3Q8N4M1 653 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC71Q8N4P6 559 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TTC39CQ8N584 583 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SRBD1Q8N5C6 995 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH2D3CQ8N5H7 860 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 DPP10Q8N608 796 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LILRA3Q8N6C8 439 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 C10orf53Q8N6V4 93 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYT2Q8N9I0 419 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MIGA1Q8NAN2 632 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TDRD5Q8NAT2 981 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 POGLUT1Q8NBL1 392 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDPRQ8NCN5 879 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 BEND2Q8NDZ0 799 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANKRD20A12PQ8NF67 263 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR7D4Q8NG98 312 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 OR52N2Q8NGI0 321 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MOSPD2Q8NHP6 518 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NFKBIDQ8NI38 313 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTCFLQ8NI51 663 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RP9Q8TA86 221 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GABPB2Q8TAK5 448 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SETD6Q8TBK2 473 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 BRIX1Q8TDN6 353 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH3RF2Q8TEC5 729 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 UTP15Q8TED0 518 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GRK7Q8WTQ7 553 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TSPEARQ8WU66 669 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SCFD2Q8WU76 684 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC22A17Q8WUG5 538 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 STYXQ8WUJ0 223 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNX33Q8WV41 574 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZFAND2BQ8WV99 257 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF606Q8WXB4 792 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CASKIN2Q8WXE0 1202 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 POMGNT1Q8WZA1 660 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LINC00476Q8WZB0 136 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CFHR4Q92496 578 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPT1BQ92523 772 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAML1Q92585 1016 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSPH1Q92598 858 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANP32BQ92688 251 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 DPF2Q92785 391 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 KAT5Q92993 513 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 WBP2Q969T9 261 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RILPL2Q969X0 211 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM162AQ96A26 154 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPSB4Q96A44 273 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 EXOC4Q96A65 974 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRIM43Q96BQ3 446 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 C3orf49Q96BT1 292 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 FOXRED1Q96CU9 486 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 C18orf8Q96DM3 657 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 DAZAP1Q96EP5 407 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 SAAL1Q96ER3 474 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC46Q96FV0 321 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 WBP1Q96G27 269 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RBM18Q96H35 190 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PHACTR3Q96KR7 559 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRGPRX4Q96LA9 322 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRGPRX1Q96LB2 322 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 Q96MF0 132 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 GBP5Q96PP8 586 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP1R10Q96QC0 940 aaKnown RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 PIGSQ96S52 555 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 DMRTA2Q96SC8 542 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 VRK1Q99986 396 aaPredicted RBP0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 NUDT22Q9BRQ3 303 aa0.62□□□□□ -2.31
RNU4-54P-201ENST00000516428 RTKNQ9BST9 563 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms