RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	THEGL	P0DJG4	465 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	VAV1	P15498	845 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	PRLR	P16471	622 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	STK19	P49842	368 aa	Predicted RBP	10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	DUSP3	P51452	185 aa	Predicted RBP	10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	RPS24	P62847	133 aa	Known RBP	10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	AMPD3	Q01432	767 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	KCNMA1	Q12791	1236 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	ELAVL3	Q14576	367 aa	Known RBP	10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	GSE1	Q14687	1217 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	E2F4	Q16254	413 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	BSPRY	Q5W0U4	402 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	PM20D1	Q6GTS8	502 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	FAM173B	Q6P4H8	233 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	USP53	Q70EK8	1073 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	TRIM69	Q86WT6	500 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	ARL14	Q8N4G2	192 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	ARRDC3	Q96B67	414 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	DHX58	Q96C10	678 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	MYEOV	Q96EZ4	313 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	PRR11	Q96HE9	360 aa	Predicted RBP	10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	RPL10L	Q96L21	214 aa	Known RBP	10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	IPO9	Q96P70	1041 aa	Known RBP	10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	CALN1	Q9BXU9	219 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	BACH2	Q9BYV9	841 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	SLC39A2	Q9NP94	309 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	EVA1B	Q9NVM1	165 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	KLHL11	Q9NVR0	708 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	SLCO3A1	Q9UIG8	710 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	PCDHGA8	Q9Y5G5	932 aa		10.86	□□□□□ -0.67
CLDND1-231	ENST00000515620	AHCTF1	Q8WYP5	2266 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	TYW5	A2RUC4	315 aa	Known RBP	10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	CPED1	A4D0V7	1026 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	YJEFN3	A6XGL0	299 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620		E7ENQ6	273 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620		K7ESM1	405 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	SLC31A1	O15431	190 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	IRAK2	O43187	625 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	EFS	O43281	561 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	NEBL	O76041	1014 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	TNFSF15	O95150	251 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	CD2BP2	O95400	341 aa	Known RBP	10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	ITGB6	P18564	788 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	CASP1	P29466	404 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	SLC11A2	P49281	568 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	NUMB	P49757	651 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	SLC8A3	P57103	927 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	ECT2L	Q008S8	904 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	TLE1	Q04724	770 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	ADIG	Q0VDE8	80 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	UBAP2L	Q14157	1087 aa	Known RBP	10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	CDKN3	Q16667	212 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	FSCB	Q5H9T9	825 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	C1orf220	Q5T0J3	134 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	AGBL4	Q5VU57	503 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	NADSYN1	Q6IA69	706 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	CNNM4	Q6P4Q7	775 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	CRTC1	Q6UUV9	634 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	RBM44	Q6ZP01	1051 aa	Known RBP	10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	UNC13D	Q70J99	1090 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	CLEC14A	Q86T13	490 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	TMEM145	Q8NBT3	493 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	OR13H1	Q8NG92	308 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	GOLGA5	Q8TBA6	731 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	TMC2	Q8TDI7	906 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	PTPRN2	Q92932	1015 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	FAM131C	Q96AQ9	280 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	UBXN6	Q9BZV1	441 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	BLZF1	Q9H2G9	400 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	KDM4C	Q9H3R0	1056 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	CUEDC2	Q9H467	287 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	USP29	Q9HBJ7	922 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	LRRC4	Q9HBW1	653 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	FZD3	Q9NPG1	666 aa		10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	COL27A1	Q8IZC6	1860 aa	Predicted RBP	10.85	□□□□□ -0.67
CLDND1-231	ENST00000515620	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	NEMP2	A6NFY4	417 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	SCAMP1	O15126	338 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	SLC7A4	O43246	635 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	ACSL4	O60488	711 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	MOCS3	O95396	460 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	IGLV3-27	P01718	113 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	ITGB2	P05107	769 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	CNTN1	Q12860	1018 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	ZNF177	Q13360	481 aa	Predicted RBP	10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	RABEP1	Q15276	862 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	GOLGA7B	Q2TAP0	167 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	ZNF542P	Q5EBM4	170 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	NUGGC	Q68CJ6	796 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	GUSBP11	Q6P575	273 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	XKR5	Q6UX68	686 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	EFL1	Q7Z2Z2	1120 aa	Known RBP	10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	CCDC117	Q8IWD4	279 aa	Predicted RBP	10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	UNC45B	Q8IWX7	931 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	APCDD1	Q8J025	514 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	SIX6OS1	Q8N1H7	587 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	CFAP52	Q8N1V2	620 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	ANKRD52	Q8NB46	1076 aa		10.84	□□□□□ -0.67
CLDND1-231	ENST00000515620	SLC4A11	Q8NBS3	891 aa		10.84	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms