RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ITGA2BP08514 1039 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 FGFR3P22607 806 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 CRABP2P29373 138 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 MAP3K10Q02779 954 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 USP4Q13107 963 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 TRIM60Q495X7 471 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 DHFR2Q86XF0 187 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 ANKRD52Q8NB46 1076 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 ACE2Q9BYF1 805 aaPredicted RBP12.91□□□□□ -0.34
USP53-209ENST00000514665 PCDH18Q9HCL0 1135 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 DMAC2Q9NW81 257 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 FASP25445 335 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 EPHA3P29320 983 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 PRIM2P49643 509 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 PSEN2P49810 448 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 MMP14P50281 582 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 ZNF280DQ6N043 979 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 MFSD5Q6N075 450 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 C11orf96Q7Z7L8 435 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 C11orf74Q86VG3 221 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 FNDC5Q8NAU1 212 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 B3GALNT2Q8NCR0 500 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 METTL6Q8TCB7 284 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 TBL1YQ9BQ87 522 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 ATP13A1Q9HD20 1204 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 IMPAD1Q9NX62 359 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 VTI1BQ9UEU0 232 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 NOCTQ9UK39 431 aaKnown RBP12.91□□□□□ -0.34
USP53-209ENST00000514665 NDUFAF1Q9Y375 327 aa12.91□□□□□ -0.34
USP53-209ENST00000514665 C4BPAP04003 597 aaKnown RBP12.9□□□□□ -0.34
USP53-209ENST00000514665 SLC2A4P14672 509 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 CHRNB2P17787 502 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 ITGALP20701 1170 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 DNAJB2P25686 324 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 S100A5P33763 92 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 MSX2P35548 267 aaPredicted RBP12.9□□□□□ -0.34
USP53-209ENST00000514665 TAF2Q6P1X5 1199 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 IL22Q9GZX6 179 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 WDR41Q9HAD4 459 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 ARL8BQ9NVJ2 186 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 ARHGAP28Q9P2N2 729 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 TEKT2Q9UIF3 430 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 SLIT3O75094 1523 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 CNTRLQ7Z7A1 2325 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 IGKV6D-41A0A0C4DH26 115 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 PRR5-ARHGAP8B1AHC4 643 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 M0R2N6 131 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 CLOCKO15516 846 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 PAPSS1O43252 624 aaPredicted RBP12.9□□□□□ -0.34
USP53-209ENST00000514665 SYNCRIPO60506 623 aaKnown RBP12.9□□□□□ -0.34
USP53-209ENST00000514665 TOMM70O94826 608 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 CCDC166P0CW27 439 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 SKIV2L2P42285 1042 aaKnown RBP12.9□□□□□ -0.34
USP53-209ENST00000514665 NEK2P51955 445 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 MRPS15P82914 257 aaKnown RBP12.9□□□□□ -0.34
USP53-209ENST00000514665 ARHGAP8P85298 464 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 CTBP1Q13363 440 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 FAM171A1Q5VUB5 890 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 CXCL17Q6UXB2 119 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 SLC41A1Q8IVJ1 513 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 KIAA2013Q8IYS2 634 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 KCTD4Q8WVF5 259 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 NSMCE2Q96MF7 247 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 VAT1Q99536 393 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 ZNF670Q9BS34 389 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 NMUR2Q9GZQ4 415 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 ALG9Q9H6U8 611 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 IL1RAPL1Q9NZN1 696 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 BTBD7Q9P203 1132 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 WRAP73Q9P2S5 460 aaPredicted RBP12.9□□□□□ -0.34
USP53-209ENST00000514665 AP4S1Q9Y587 144 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 CD48P09326 243 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 PIRTP0C851 137 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 FAM182AQ5T1J6 154 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 LRRC8DQ7L1W4 858 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 FAM126BQ8IXS8 530 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 DAW1Q8N136 415 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 LZTR1Q8N653 840 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 CPT1BQ92523 772 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 NR1H4Q96RI1 486 aaPredicted RBP12.9□□□□□ -0.34
USP53-209ENST00000514665 NDNQ99608 321 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 UBXN6Q9BZV1 441 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 TAS2R13Q9NYV9 303 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 GRHL1Q9NZI5 618 aa12.9□□□□□ -0.34
USP53-209ENST00000514665 KANSL1LA0AUZ9 987 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 CCNT2O60583 730 aaKnown RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 ATP4AP20648 1035 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 WEE1P30291 646 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 SLC20A2Q08357 652 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 XRCC4Q13426 336 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PGS1Q32NB8 556 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 SLC39A12Q504Y0 691 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 ANKRD22Q5VYY1 191 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 MON1BQ7L1V2 547 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 CLNKQ7Z7G1 428 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 FAM13CQ8NE31 585 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 RNF145Q96MT1 663 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 ROGDIQ9GZN7 287 aa12.89□□□□□ -0.35
USP53-209ENST00000514665 PDGFDQ9GZP0 370 aaPredicted RBP12.89□□□□□ -0.35
USP53-209ENST00000514665 ELOVL6Q9H5J4 265 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms