RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ALG3Q92685 438 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 NOL6Q9H6R4 1146 aaKnown RBP13.4□□□□□ -0.26
TCOF1-213ENST00000514442 TBCCD1Q9NVR7 557 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 NSMCE4AQ9NXX6 385 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 TRPM5Q9NZQ8 1165 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 SNCAIPQ9Y6H5 919 aa13.4□□□□□ -0.26
TCOF1-213ENST00000514442 TBC1D4O60343 1298 aa13.4□□□□□ -0.27
TCOF1-213ENST00000514442 ASS1P00966 412 aaKnown RBP13.4□□□□□ -0.27
TCOF1-213ENST00000514442 SERPINA6P08185 405 aa13.4□□□□□ -0.27
TCOF1-213ENST00000514442 USP17L7P0C7H9 530 aa13.4□□□□□ -0.27
TCOF1-213ENST00000514442 AXLP30530 894 aa13.4□□□□□ -0.27
TCOF1-213ENST00000514442 RPL10AP62906 217 aaKnown RBP13.4□□□□□ -0.27
TCOF1-213ENST00000514442 KRR1Q13601 381 aaKnown RBP13.4□□□□□ -0.27
TCOF1-213ENST00000514442 LPPQ93052 612 aa13.4□□□□□ -0.27
TCOF1-213ENST00000514442 TNFSF13BQ9Y275 285 aa13.4□□□□□ -0.27
TCOF1-213ENST00000514442 CHD2O14647 1828 aaKnown RBP13.39□□□□□ -0.27
TCOF1-213ENST00000514442 E9PBE3 544 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 KLHL41O60662 606 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 GRK2P25098 689 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 FOXN2P32314 431 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 PTGIRP43119 386 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 SLC39A12Q504Y0 691 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 KLHDC10Q6PID8 442 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 ZDHHC24Q6UX98 284 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 HS6ST3Q8IZP7 471 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 SIX5Q8N196 739 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 USP13Q92995 863 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-213ENST00000514442 PCDH9Q9HC56 1237 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 COPG2Q9UBF2 871 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 NRCAMQ92823 1304 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 KCPQ6ZWJ8 1503 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 PLA2G6O60733 806 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 ALBP02768 609 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 ZNF12P17014 697 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 SLC1A6P48664 564 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 SLC6A3Q01959 620 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 WSCD1Q658N2 575 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 VCPIP1Q96JH7 1222 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 SENP8Q96LD8 212 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 PWWP2AQ96N64 755 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 PPP1R2P1Q96PQ5 205 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 HMG20AQ9NP66 347 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 DCDC2Q9UHG0 476 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 PCDHB8Q9UN66 801 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 DOLKQ9UPQ8 538 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 TPH1P17752 444 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 EIF4BP23588 611 aaKnown RBP13.39□□□□□ -0.27
TCOF1-213ENST00000514442 OXCT1P55809 520 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 LSAMPQ13449 338 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 NFE2Q16621 373 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-213ENST00000514442 MRPS31Q92665 395 aaKnown RBP13.39□□□□□ -0.27
TCOF1-213ENST00000514442 SMARCD1Q96GM5 515 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 CLPTM1LQ96KA5 538 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 UNKQ9C0B0 810 aaKnown RBP13.39□□□□□ -0.27
TCOF1-213ENST00000514442 SMPD4Q9NXE4 827 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 USP2O75604 605 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-213ENST00000514442 NEK3P51956 506 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 SLC1A5Q15758 541 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 SGO1Q5FBB7 561 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 HYIQ5T013 277 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 DACT3Q96B18 629 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-213ENST00000514442 AVENQ9NQS1 362 aaPredicted RBP13.39□□□□□ -0.27
TCOF1-213ENST00000514442 PNPLA3Q9NST1 481 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 CRLS1Q9UJA2 301 aa13.39□□□□□ -0.27
TCOF1-213ENST00000514442 CAPN8A6NHC0 703 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 CBX4O00257 560 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ANGPT2O15123 496 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 SERPIND1P05546 499 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 AQP4P55087 323 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 MAP2K5Q13163 448 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 UBAP2LQ14157 1087 aaKnown RBP13.38□□□□□ -0.27
TCOF1-213ENST00000514442 PTK2BQ14289 1009 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ATP13A4Q4VNC1 1196 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ARHGAP15Q53QZ3 475 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 RSBN1Q5VWQ0 802 aaPredicted RBP13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ZCCHC7Q8N3Z6 543 aaKnown RBP13.38□□□□□ -0.27
TCOF1-213ENST00000514442 WNK4Q96J92 1243 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 AAR2Q9Y312 384 aaKnown RBP13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ARIH1Q9Y4X5 557 aaPredicted RBP13.38□□□□□ -0.27
TCOF1-213ENST00000514442 PCDHB5Q9Y5E4 795 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ANKRD33BA6NCL7 494 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 SYNDIG1LA6NDD5 238 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 SLC15A5A6NIM6 579 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 KCNK1O00180 336 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 SPTLC1O15269 473 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 BIRC5O15392 142 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 PEX1O43933 1283 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 MYO1DO94832 1006 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ZSCAN5DPP0CG00 497 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 NUDT18Q6ZVK8 323 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 PLPPR4Q7Z2D5 763 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 NUP93Q8N1F7 819 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 ULBP1Q9BZM6 244 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 HMX1Q9NP08 348 aaPredicted RBP13.38□□□□□ -0.27
TCOF1-213ENST00000514442 CHST12Q9NRB3 414 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 GSNP06396 782 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 HIRAP54198 1017 aaPredicted RBP13.38□□□□□ -0.27
TCOF1-213ENST00000514442 FAAP100Q0VG06 881 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 STX5Q13190 355 aa13.38□□□□□ -0.27
TCOF1-213ENST00000514442 MTA1Q13330 715 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms