RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SPTA1P02549 2419 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 BPTFQ12830 3046 aa8.13□□□□□ -1.11
LIMCH1-219ENST00000514096 PLXNA3P51805 1871 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 ZBTB24O43167 697 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 CYP11B1P15538 503 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 FAM183BPQ6ZVS7 135 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 C11orf96Q7Z7L8 435 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 UNC93AQ86WB7 457 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 GATAD2AQ86YP4 633 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 SLC7A5P1Q8MH63 180 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 TAB3Q8N5C8 712 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 TNIP2Q8NFZ5 429 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 MAELQ96JY0 434 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 TBCBQ99426 244 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 FNDC3AQ9Y2H6 1198 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 ASB3Q9Y575 518 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 NBASA2RRP1 2371 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 A8MX80 341 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 KLF8O95600 359 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 KLKB1P03952 638 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 EPHX1P07099 455 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 TBX4P57082 545 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 PFKPQ01813 784 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 CREB5Q02930 508 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 PDCLQ13371 301 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 ASIC2Q16515 512 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 PTPN20Q4JDL3 420 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 KCNT1Q5JUK3 1230 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 DGKKQ5KSL6 1271 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 SERPINA13PQ6UXR4 307 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 MAMSTRQ6ZN01 415 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 MAP7D3Q8IWC1 876 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 CRYBG2Q8N1P7 616 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 CCDC63Q8NA47 563 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 C18orf8Q96DM3 657 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 ZWILCHQ9H900 591 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 ABCB8Q9NUT2 735 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 DKK3Q9UBP4 350 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 SLC8A2Q9UPR5 921 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 RBMX2Q9Y388 322 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 PLK4O00444 970 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 PAPSS1O43252 624 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 HNRNPRO43390 633 aaKnown RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 TULP3O75386 442 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 S100BP04271 92 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 ERBB2P04626 1255 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 CYBBP04839 570 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 ADH5P11766 374 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 PDGFRAP16234 1089 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 DHPSP49366 369 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 HDAC4P56524 1084 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 KCTD21Q4G0X4 260 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 RHBDF2Q6PJF5 856 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 ITIH6Q6UXX5 1313 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 PACS1Q6VY07 963 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 NCCRP1Q6ZVX7 275 aaPredicted RBP8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 BTN2A1Q7KYR7 527 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 LMNTD2Q8IXW0 634 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 TMEFF1Q8IYR6 380 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 KLK6Q92876 244 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 SHDQ96IW2 340 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 ANKRD27Q96NW4 1050 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 MCEEQ96PE7 176 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 GOLPH3Q9H4A6 298 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 HAUS4Q9H6D7 363 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 CD93Q9NPY3 652 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 NCDNQ9UBB6 729 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 TMCC3Q9ULS5 477 aa8.12□□□□□ -1.11
LIMCH1-219ENST00000514096 DAPK3O43293 454 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 MED7O43513 233 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 TRUB2O95900 331 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 SLC4A1P02730 911 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 CHKAP35790 457 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 TRPC1P48995 793 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 DYNC1I2Q13409 638 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 LAYNQ6UX15 382 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 TMEM35BQ8NCS4 154 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 OR8K1Q8NGG5 319 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 LMO3Q8TAP4 145 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 CAPZA3Q96KX2 299 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 GBP5Q96PP8 586 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 SELENOOQ9BVL4 669 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 LRRC3Q9BY71 257 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 LTB4R2Q9NPC1 389 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 HPS4Q9NQG7 708 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 GMNNO75496 209 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 KAT7O95251 611 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 MCM3P25205 808 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 EEF1GP26641 437 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 MAT2AP31153 395 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 PSMD7P51665 324 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 SGSHP51688 502 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 YWHAZP63104 245 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 FNDC3BQ53EP0 1204 aaKnown RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 COBLL1Q53SF7 1204 aa8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 ASTLQ6HA08 431 aaPredicted RBP8.11□□□□□ -1.11
LIMCH1-219ENST00000514096 TAC4Q86UU9 113 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms