RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 SNAP91O60641 907 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 FGRP09769 529 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 GABRB2P47870 512 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 NME5P56597 212 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 NADK2Q4G0N4 442 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 DCAF6Q58WW2 860 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 DEPDC1Q5TB30 811 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 C1orf186Q6ZWK4 172 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 ERI1Q8IV48 349 aaKnown RBP11.46□□□□□ -0.57
TCOF1-211ENST00000513346 OR7A2PQ8NGA2 310 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 RCN3Q96D15 328 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 TCF12Q99081 682 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 P2RX7Q99572 595 aaKnown RBP11.46□□□□□ -0.57
TCOF1-211ENST00000513346 DGCR6LQ9BY27 220 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 C12orf65Q9H3J6 166 aaKnown RBP11.46□□□□□ -0.57
TCOF1-211ENST00000513346 NMRAL1Q9HBL8 299 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 NMRK2Q9NPI5 230 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 IARS2Q9NSE4 1012 aaKnown RBP11.46□□□□□ -0.57
TCOF1-211ENST00000513346 DPP3Q9NY33 737 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 NR2E3Q9Y5X4 410 aa11.46□□□□□ -0.57
TCOF1-211ENST00000513346 UBA6A0AVT1 1052 aaPredicted RBP11.46□□□□□ -0.58
TCOF1-211ENST00000513346 WDR27A2RRH5 827 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 E5RI56 91 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 EEF2KO00418 725 aaKnown RBP11.46□□□□□ -0.58
TCOF1-211ENST00000513346 TPP1O14773 563 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 TGFB1I1O43294 461 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 IDH3BO43837 385 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 ZBTB11O95625 1053 aaPredicted RBP11.46□□□□□ -0.58
TCOF1-211ENST00000513346 CCNG1P51959 295 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 HYIQ5T013 277 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 ARMC4Q5T2S8 1044 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 MPZL3Q6UWV2 235 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 TMC7Q7Z402 723 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 STK32CQ86UX6 486 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 UNC45BQ8IWX7 931 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 SIX5Q8N196 739 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 DQX1Q8TE96 717 aaKnown RBP11.46□□□□□ -0.58
TCOF1-211ENST00000513346 SLC44A1Q8WWI5 657 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 PCDHB18PQ96TA0 734 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 CPNE1Q99829 537 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 KCTD14Q9BQ13 255 aaPredicted RBP11.46□□□□□ -0.58
TCOF1-211ENST00000513346 GPATCH1Q9BRR8 931 aaKnown RBP11.46□□□□□ -0.58
TCOF1-211ENST00000513346 WDR12Q9GZL7 423 aaKnown RBP11.46□□□□□ -0.58
TCOF1-211ENST00000513346 DHX33Q9H6R0 707 aaKnown RBP11.46□□□□□ -0.58
TCOF1-211ENST00000513346 MAN1C1Q9NR34 630 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 GPATCH2LQ9NWQ4 482 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 SLIT2O94813 1529 aa11.46□□□□□ -0.58
TCOF1-211ENST00000513346 PNMA8CA0A1B0GUJ8 204 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 PTGES3LE9PB15 166 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 GPR182O15218 404 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 RAD51BO15315 384 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 VTNP04004 478 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 KDELR1P24390 212 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 POLD3Q15054 466 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-211ENST00000513346 LRRC8DQ7L1W4 858 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 NSMCE2Q96MF7 247 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 KCNMB3Q9NPA1 279 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 LINC00854A0A1B0GVQ3 168 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 LYPLA1O75608 230 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-211ENST00000513346 ALOX12P18054 663 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 PIK3R1P27986 724 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 ADSSP30520 456 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 TAS2R40P59535 323 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 ARPC4P59998 168 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 RPL26P61254 145 aaKnown RBP11.45□□□□□ -0.58
TCOF1-211ENST00000513346 IL5RAQ01344 420 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 KLF10Q13118 480 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 ECM1Q16610 540 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 GOLGA7BQ2TAP0 167 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 KDELC2Q7Z4H8 507 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 ANKS1BQ7Z6G8 1248 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 TRIM69Q86WT6 500 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 SVOPQ8N4V2 548 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 SLC7A14Q8TBB6 771 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 SPIRE2Q8WWL2 714 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 ELMO3Q96BJ8 720 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 MTMR12Q9C0I1 747 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 CYP4F12Q9HCS2 524 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 XPNPEP3Q9NQH7 507 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 MEIS2O14770 477 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 NKRFO15226 690 aaKnown RBP eCLIP11.45□□□□□ -0.58
TCOF1-211ENST00000513346 ALOX15P16050 662 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-211ENST00000513346 PGAM1P18669 254 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 GRIA3P42263 894 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 SLC5A3P53794 718 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 RAB14P61106 215 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 SPIDRQ14159 915 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 LINC00523Q86TU6 105 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 AHI1Q8N157 1196 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 MYO1HQ8N1T3 1032 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 SHCBP1Q8NEM2 672 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 MAGEE2Q8TD90 523 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-211ENST00000513346 SPATA17Q96L03 361 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 CGRRF1Q99675 332 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 THUMPD3Q9BV44 507 aaKnown RBP11.45□□□□□ -0.58
TCOF1-211ENST00000513346 C6orf62Q9GZU0 229 aaPredicted RBP11.45□□□□□ -0.58
TCOF1-211ENST00000513346 CISHQ9NSE2 258 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 PLK2Q9NYY3 685 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 SH3BP1Q9Y3L3 701 aa11.45□□□□□ -0.58
TCOF1-211ENST00000513346 hCG_1818297A0A087WSY0 165 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms