RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 DUSP3P51452 185 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 OTUD4Q01804 1114 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.33□□□□□ -1.72
VCAN-209ENST00000513016 CYLC2Q14093 348 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 TTI2Q6NXR4 508 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HIST3H2AQ7L7L0 130 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 NKAPQ8N5F7 415 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 PIP4K2CQ8TBX8 421 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 IRGQQ8WZA9 623 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PRCCQ92733 491 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 HIST1H2ACQ93077 130 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 THUMPD3Q9BV44 507 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 RNPEPQ9H4A4 650 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 IL17RBQ9NRM6 502 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PNMA8BQ9ULN7 279 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 ANKRD6Q9Y2G4 727 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 GOLGA8RI6L899 631 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 O00370 1275 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 FPGTO14772 594 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CYTH3O43739 400 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CPSF4O95639 269 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 SERPINH1P50454 418 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 NR1I3Q14994 352 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PARP6Q2NL67 630 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 AFTPHQ6ULP2 937 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 RGS9BPQ6ZS82 235 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PLEKHM3Q6ZWE6 761 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PTAR1Q7Z6K3 402 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 CACUL1Q86Y37 369 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 P3H2Q8IVL5 708 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CLEC4FQ8N1N0 589 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ZSCAN1Q8NBB4 408 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HIPK4Q8NE63 616 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CELF6Q96J87 481 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 ARHGAP9Q9BRR9 750 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 TTLL2Q9BWV7 592 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ANLNQ9NQW6 1124 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ATAD3AQ9NVI7 634 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ARHGAP28Q9P2N2 729 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ARIH1Q9Y4X5 557 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 FAM86B1E9PN63 330 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 XPO1O14980 1071 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 FAM86B2P0C5J1 330 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 PIM1P11309 404 aaPredicted RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 CCDC130P13994 396 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 SARSP49591 514 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 CASP4P49662 377 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 NFIL3Q16649 462 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CYP51A1Q16850 503 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 ATP13A4Q4VNC1 1196 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 WDR45BQ5MNZ6 344 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 NEK5Q6P3R8 708 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 C11orf88Q6PI97 169 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 MARK2Q7KZI7 788 aaKnown RBP4.33□□□□□ -1.72
VCAN-209ENST00000513016 LUZP2Q86TE4 346 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 GRIN3AQ8TCU5 1115 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 AGR3Q8TD06 166 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 HTR3CQ8WXA8 447 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 CHAMP1Q96JM3 812 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 AURKCQ9UQB9 309 aa4.33□□□□□ -1.72
VCAN-209ENST00000513016 KIAA1210Q9ULL0 1709 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 GMNCA6NCL1 334 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 ELFN1P0C7U0 828 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 TAS2R50P59544 299 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 GTF2BQ00403 316 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 CAPSQ13938 189 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 CHST9Q7L1S5 443 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 KRT73Q86Y46 540 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 CENPLQ8N0S6 344 aaPredicted RBP4.32□□□□□ -1.72
VCAN-209ENST00000513016 FBXL16Q8N461 479 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 FLCNQ8NFG4 579 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 LPPQ93052 612 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 ERP44Q9BS26 406 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 TRMT61BQ9BVS5 477 aaKnown RBP4.32□□□□□ -1.72
VCAN-209ENST00000513016 DPY30Q9C005 99 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 ASB8Q9H765 288 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 PARVBQ9HBI1 364 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 PAPOLBQ9NRJ5 636 aaKnown RBP4.32□□□□□ -1.72
VCAN-209ENST00000513016 ENOPH1Q9UHY7 261 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 SLC27A5Q9Y2P5 690 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 NEDD8-MDP1E9PL57 170 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 RGS14O43566 566 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 DAB1O75553 588 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 NFICP08651 508 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 FDPSP14324 419 aaKnown RBP4.32□□□□□ -1.72
VCAN-209ENST00000513016 HNRNPH1P31943 449 aaKnown RBP4.32□□□□□ -1.72
VCAN-209ENST00000513016 TTPAP49638 278 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 CDK16Q00536 496 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 PDGFRLQ15198 375 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 PGS1Q32NB8 556 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 CBWD6Q4V339 395 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 GJB7Q6PEY0 223 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 STRA8Q7Z7C7 330 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 FAM124AQ86V42 546 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 MCOLN2Q8IZK6 566 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 C9orf72Q96LT7 481 aa4.32□□□□□ -1.72
VCAN-209ENST00000513016 PPP1R10Q96QC0 940 aaKnown RBP4.32□□□□□ -1.72
VCAN-209ENST00000513016 THAP2Q9H0W7 228 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms