RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 EBF4Q9BQW3 602 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 HERPUD2Q9BSE4 406 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 IL22Q9GZX6 179 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ATXN3LQ9H3M9 355 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 POMKQ9H5K3 350 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CAB39LQ9H9S4 337 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PRDM16Q9HAZ2 1276 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 LZTS1Q9Y250 596 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 TNPO2O14787 897 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PAPSS1O43252 624 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 VCLP18206 1134 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 FGFR3P22607 806 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 HMOX2P30519 316 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC5A9Q2M3M2 681 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 RALGPS1Q5JS13 557 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 SH3PXD2AQ5TCZ1 1133 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 TSHZ1Q6ZSZ6 1077 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PLPPR4Q7Z2D5 763 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PTAR1Q7Z6K3 402 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 RIOX2Q8IUF8 465 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ANKRD52Q8NB46 1076 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 HSFY1Q96LI6 401 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CSPG4P5Q96PW8 444 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 NDNQ99608 321 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 RTKNQ9BST9 563 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 BEGAINQ9BUH8 593 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 WDR55Q9H6Y2 383 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 POPDC2Q9HBU9 364 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC7A8Q9UHI5 535 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 AP4B1Q9Y6B7 739 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 C10orf71Q711Q0 1435 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 FAM95CA0A1B0GW59 222 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 C2CD4BA6NLJ0 364 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ERI2A8K979 691 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PLIN3O60664 434 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CSPG5O95196 566 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 FESP07332 822 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 NFKBIAP25963 317 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ACTR3P61158 418 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 SNAPC2Q13487 334 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 NFYCQ13952 458 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 SPOUT1Q5T280 376 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 LRRC8BQ6P9F7 803 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC22A9Q8IVM8 553 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 BLOC1S5Q8TDH9 187 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CCDC28BQ9BUN5 200 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CDHR5Q9HBB8 845 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 DDX43Q9NXZ2 648 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 GPRC5DQ9NZD1 345 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CD274Q9NZQ7 290 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 BLOC1S6Q9UL45 172 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PAIP2BQ9ULR5 123 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PSMD13Q9UNM6 376 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 TIMM13Q9Y5L4 95 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 TJP1Q07157 1748 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ZNF536O15090 1300 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 C15orf38-AP3S2A0A0A6YYH1 394 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 TBC1D4O60343 1298 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 VAV1P15498 845 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 FASP25445 335 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ASPAP45381 313 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 INSCQ1MX18 579 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC44A4Q53GD3 710 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 SAMD4BQ5PRF9 694 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ARPINQ7Z6K5 226 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PIGZQ86VD9 579 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC41A1Q8IVJ1 513 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CMASQ8NFW8 434 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 KCTD4Q8WVF5 259 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 VAT1Q99536 393 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 MRPL45Q9BRJ2 306 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 ZCWPW1Q9H0M4 648 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 NDFIP2Q9NV92 336 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 RIC8BQ9NVN3 520 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 PRPF19Q9UMS4 504 aaKnown RBP8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CNTNAP2Q9UHC6 1331 aa8.57□□□□□ -1.04
LIMCH1-216ENST00000512820 CXorf49A8MYA2 514 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 PSMD12O00232 456 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MGEA5O60502 916 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 OAS1P00973 400 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 LGALS2P05162 132 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 PYGLP06737 847 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MLNP12872 115 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 NFKB1P19838 968 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 PSME3P61289 254 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 PEX6Q13608 980 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 HSDL1Q3SXM5 330 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 TIGD7Q6NT04 549 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MRNIPQ6NTE8 343 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 ASRGL1Q7L266 308 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 ERO1BQ86YB8 467 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 CLVS1Q8IUQ0 354 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 ENDOVQ8N8Q3 282 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 DDHD1Q8NEL9 900 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 PCDH19Q8TAB3 1148 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 MAML3Q96JK9 1138 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 OMDQ99983 421 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 SYT15Q9BQS2 421 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 DCUN1D5Q9BTE7 237 aa8.56□□□□□ -1.04
LIMCH1-216ENST00000512820 SLC25A23Q9BV35 468 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms