RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CENPFP49454 3210 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 A0A0U1RQF3 1178 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 FAM237BA0A1B0GVD1 139 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 HMX2A2RU54 273 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 MYADML2A6NDP7 307 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TPP1O14773 563 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 H2AFYO75367 372 aaKnown RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 B3GAT3O94766 335 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 MPOP05164 745 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 T-ENOLP0DO92 83 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 MYL2P10916 166 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 EPHB2P29323 1055 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 SERPINB3P29508 390 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 CSE1LP55060 971 aaKnown RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 BSPRYQ5W0U4 402 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 GPRIN1Q7Z2K8 1008 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TMEM135Q86UB9 458 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 LCA5Q86VQ0 697 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 LONP2Q86WA8 852 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 DNAAF3Q8N9W5 541 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 C3orf58Q8NDZ4 430 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TRPV1Q8NER1 839 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 PPP4R1Q8TF05 950 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 AGAP11Q8TF27 550 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 LPPQ93052 612 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 RNF34Q969K3 372 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TSGA13Q96PP4 275 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 HAPLN3Q96S86 360 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 KCNK16Q96T55 309 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 BTBD10Q9BSF8 475 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TBC1D10AQ9BXI6 508 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TKTL2Q9H0I9 626 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 C12orf65Q9H3J6 166 aaKnown RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 CATSPERBQ9H7T0 1116 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 EBF2Q9HAK2 575 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 KCNK13Q9HB14 408 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 ABCC13Q9NSE7 274 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.26□□□□□ -0.45
NUP54-202ENST00000502850 FNIP2Q9P278 1114 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 KANSL3Q9P2N6 904 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 OR12D3Q9UGF7 316 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 TRIM33Q9UPN9 1127 aa12.26□□□□□ -0.45
NUP54-202ENST00000502850 AAR2Q9Y312 384 aaKnown RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 HBS1LQ9Y450 684 aaKnown RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 MYO18AQ92614 2054 aaKnown RBP12.26□□□□□ -0.45
NUP54-202ENST00000502850 NLRC5Q86WI3 1866 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 ARHGAP42A6NI28 874 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 MEIS3P2A8K0S8 358 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 KCNK1O00180 336 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 INPPL1O15357 1258 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 CBX6O95503 412 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 APOA4P06727 396 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 ESRRAP11474 423 aaPredicted RBP12.25□□□□□ -0.45
NUP54-202ENST00000502850 THPOP40225 353 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 FLT3LGP49771 235 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 CDH17Q12864 832 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 DSC3Q14574 896 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 KCTD11Q693B1 232 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 BHLHA9Q7RTU4 235 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 TAC4Q86UU9 113 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 LRRC49Q8IUZ0 686 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 RNF169Q8NCN4 708 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 ADAM32Q8TC27 787 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 ZNF669Q96BR6 464 aaPredicted RBP12.25□□□□□ -0.45
NUP54-202ENST00000502850 TBC1D31Q96DN5 1066 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 PTCD3Q96EY7 689 aaKnown RBP12.25□□□□□ -0.45
NUP54-202ENST00000502850 RBBP8Q99708 897 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 TMPRSS4Q9NRS4 437 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 MIOSQ9NXC5 875 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 ARHGEF38Q9NXL2 777 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 DONSONQ9NYP3 566 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 PADI3Q9ULW8 664 aa12.25□□□□□ -0.45
NUP54-202ENST00000502850 TIMM13Q9Y5L4 95 aaPredicted RBP12.25□□□□□ -0.45
NUP54-202ENST00000502850 FAM72CH0Y354 149 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 FCHO1O14526 889 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 PLIN3O60664 434 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 CABYRO75952 493 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 LRIG2O94898 1065 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 IGLV3-25P01717 112 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 ALDOAP04075 364 aaKnown RBP12.24□□□□□ -0.45
NUP54-202ENST00000502850 SERPINE1P05121 402 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 CCNCP24863 283 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 CST5P28325 142 aaPredicted RBP12.24□□□□□ -0.45
NUP54-202ENST00000502850 TYK2P29597 1187 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 MAGEA12P43365 314 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 LIMK2P53671 638 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 E2F5Q15329 346 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 FASTKD1Q53R41 847 aaKnown RBP12.24□□□□□ -0.45
NUP54-202ENST00000502850 N4BP2L1Q5TBK1 243 aaPredicted RBP12.24□□□□□ -0.45
NUP54-202ENST00000502850 FAM72AQ5TYM5 149 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 OVOS1Q6IE37 1185 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 FAM72DQ6L9T8 149 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 TIGD7Q6NT04 549 aaPredicted RBP12.24□□□□□ -0.45
NUP54-202ENST00000502850 FAM72BQ86X60 149 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 ARID3BQ8IVW6 561 aaPredicted RBP12.24□□□□□ -0.45
NUP54-202ENST00000502850 CCDC117Q8IWD4 279 aaPredicted RBP12.24□□□□□ -0.45
NUP54-202ENST00000502850 KLHDC8BQ8IXV7 354 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 ATPAF2Q8N5M1 289 aa12.24□□□□□ -0.45
NUP54-202ENST00000502850 PCSK9Q8NBP7 692 aaKnown RBP12.24□□□□□ -0.45
NUP54-202ENST00000502850 SLAIN1Q8ND83 568 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms