RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 APOLD1Q96LR9 279 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 FAM117AQ9C073 453 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 KCTD10Q9H3F6 313 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 ZDHHC9Q9Y397 364 aa17.05■□□□□ 0.32
VIM-208ENST00000497849 HEMK1Q9Y5R4 338 aaPredicted RBP17.05■□□□□ 0.32
VIM-208ENST00000497849 PVALEFA0A1B0GWK0 134 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 PLRG1O43660 514 aaKnown RBP17.04■□□□□ 0.32
VIM-208ENST00000497849 ACSL4O60488 711 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 NR3C1P04150 777 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 VAV1P15498 845 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 NUDT1P36639 197 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 GCLMP48507 274 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 NASPP49321 788 aaPredicted RBP17.04■□□□□ 0.32
VIM-208ENST00000497849 PPP3CAQ08209 521 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 ADIGQ0VDE8 80 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 STK4Q13043 487 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 CUL4BQ13620 913 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 LINC00303Q3SY05 128 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 POM121L1PQ3SYA9 428 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 FOXD4L6Q3SYB3 417 aaPredicted RBP17.04■□□□□ 0.32
VIM-208ENST00000497849 HS1BP3Q53T59 392 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 FOXD4L3Q6VB84 417 aaPredicted RBP17.04■□□□□ 0.32
VIM-208ENST00000497849 TRIM69Q86WT6 500 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 CARNMT1Q8N4J0 409 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 HJURPQ8NCD3 748 aaPredicted RBP17.04■□□□□ 0.32
VIM-208ENST00000497849 KIAA0895Q8NCT3 520 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 TATDN2Q93075 761 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 KLHDC7BQ96G42 594 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 RPL10LQ96L21 214 aaKnown RBP17.04■□□□□ 0.32
VIM-208ENST00000497849 DNAI2Q9GZS0 605 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 KDM4CQ9H3R0 1056 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 ABCC13Q9NSE7 274 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 KLHL11Q9NVR0 708 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 TJP2Q9UDY2 1190 aa17.04■□□□□ 0.32
VIM-208ENST00000497849 PMS2P1A4D2B8 440 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 CDRT15L2A8MXV6 281 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 PRAMEF26H0Y7S4 382 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 XPO1O14980 1071 aaKnown RBP17.03■□□□□ 0.32
VIM-208ENST00000497849 EFSO43281 561 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 PIAS2O75928 621 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 TRIM49P0CI25 452 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 TRIM49CP0CI26 452 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 ZSCAN22P10073 491 aaPredicted RBP17.03■□□□□ 0.32
VIM-208ENST00000497849 RBMS1P29558 406 aaKnown RBP17.03■□□□□ 0.32
VIM-208ENST00000497849 SLC11A2P49281 568 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 VAMP7P51809 220 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 NFKB2Q00653 900 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 ECT2LQ008S8 904 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 KCNMA1Q12791 1236 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 CLN3Q13286 438 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 ELAVL3Q14576 367 aaKnown RBP17.03■□□□□ 0.32
VIM-208ENST00000497849 ARL13BQ3SXY8 428 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 CEP135Q66GS9 1140 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 MSANTD2Q6P1R3 559 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 SHC4Q6S5L8 630 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 TMEM145Q8NBT3 493 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 LINC00301Q8NCQ3 95 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 AZIN2Q96A70 460 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 ATXN7L3BQ96GX2 97 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 ABCG4Q9H172 646 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 LRRC4Q9HBW1 653 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 CISHQ9NSE2 258 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 SARDHQ9UL12 918 aa17.03■□□□□ 0.32
VIM-208ENST00000497849 SLC7A4O43246 635 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 THEGLP0DJG4 465 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 TGM2P21980 687 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 STK19P49842 368 aaPredicted RBP17.02■□□□□ 0.32
VIM-208ENST00000497849 SLC8A3P57103 927 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 CDH18Q13634 790 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 C6orf132Q5T0Z8 1188 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 AGBL4Q5VU57 503 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 NUGGCQ68CJ6 796 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 UNC45BQ8IWX7 931 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 APCDD1Q8J025 514 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 MAPK15Q8TD08 544 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 CCDC97Q96F63 343 aaPredicted RBP17.02■□□□□ 0.32
VIM-208ENST00000497849 STARD5Q9NSY2 213 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 NLGN3Q9NZ94 848 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 TSPAN16Q9UKR8 245 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 PCDHGA8Q9Y5G5 932 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 ENTPD2Q9Y5L3 495 aa17.02■□□□□ 0.32
VIM-208ENST00000497849 RP1P56715 2156 aa17.02■□□□□ 0.31
VIM-208ENST00000497849 LRRK2Q5S007 2527 aa17.02■□□□□ 0.31
VIM-208ENST00000497849 UNC79Q9P2D8 2635 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 RELNP78509 3460 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 PDXKO00764 312 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 KLRC4O43908 158 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 LUC7L3O95232 432 aaKnown RBP17.01■□□□□ 0.31
VIM-208ENST00000497849 DAOAP59103 153 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 CNTN1Q12860 1018 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 STK38Q15208 465 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 GOLGA7BQ2TAP0 167 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 KMT5BQ4FZB7 885 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 SETMARQ53H47 684 aaPredicted RBP17.01■□□□□ 0.31
VIM-208ENST00000497849 CFAP52Q8N1V2 620 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 IFI44Q8TCB0 444 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 SEMA4DQ92854 862 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 MYOCQ99972 504 aa17.01■□□□□ 0.31
VIM-208ENST00000497849 NUCKS1Q9H1E3 243 aaKnown RBP17.01■□□□□ 0.31
VIM-208ENST00000497849 MAGEF1Q9HAY2 307 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms