RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 CDK4P11802 303 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 CD58P19256 250 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 HNF1BP35680 557 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 PIK3CAP42336 1068 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 YWHAGP61981 247 aaKnown RBP eCLIP13.63□□□□□ -0.23
HDAC3-213ENST00000492506 STK4Q13043 487 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 BEND6Q5SZJ8 279 aaPredicted RBP13.63□□□□□ -0.23
HDAC3-213ENST00000492506 HES3Q5TGS1 186 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 PM20D1Q6GTS8 502 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 LRRC69Q6ZNQ3 347 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 USP30Q70CQ3 517 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 B4GALNT4Q76KP1 1039 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 ADAT2Q7Z6V5 191 aaKnown RBP13.63□□□□□ -0.23
HDAC3-213ENST00000492506 ZNF605Q86T29 641 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 PIGZQ86VD9 579 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 DHX40Q8IX18 779 aaKnown RBP13.63□□□□□ -0.23
HDAC3-213ENST00000492506 WFDC5Q8TCV5 224 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 NDRG1Q92597 394 aaKnown RBP13.63□□□□□ -0.23
HDAC3-213ENST00000492506 MYO19Q96H55 970 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 CCDC34Q96HJ3 373 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 CNDP2Q96KP4 475 aaKnown RBP13.63□□□□□ -0.23
HDAC3-213ENST00000492506 ZNF396Q96N95 335 aaPredicted RBP13.63□□□□□ -0.23
HDAC3-213ENST00000492506 RSPH9Q9H1X1 276 aaPredicted RBP13.63□□□□□ -0.23
HDAC3-213ENST00000492506 MTG2Q9H4K7 406 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 MAGEF1Q9HAY2 307 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 ABCB8Q9NUT2 735 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 SERGEFQ9UGK8 458 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 STRIP2Q9ULQ0 834 aa13.63□□□□□ -0.23
HDAC3-213ENST00000492506 A0A1W2PR77 199 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 H0YHG0 523 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 H3BQF6 201 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 POLR2DO15514 142 aaKnown RBP13.62□□□□□ -0.23
HDAC3-213ENST00000492506 SHOX2O60902 331 aaPredicted RBP13.62□□□□□ -0.23
HDAC3-213ENST00000492506 NR3C1P04150 777 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 DLDP09622 509 aaKnown RBP13.62□□□□□ -0.23
HDAC3-213ENST00000492506 PABPC1P11940 636 aaKnown RBP13.62□□□□□ -0.23
HDAC3-213ENST00000492506 TRIM21P19474 475 aaKnown RBP13.62□□□□□ -0.23
HDAC3-213ENST00000492506 ARHGAP25P42331 645 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 SGSHP51688 502 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 GALCP54803 685 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 C21orf59P57076 290 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 SARNPP82979 210 aaKnown RBP13.62□□□□□ -0.23
HDAC3-213ENST00000492506 KCNJ12Q14500 433 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 MBLAC2Q68D91 279 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 ZNF776Q68DI1 518 aaPredicted RBP13.62□□□□□ -0.23
HDAC3-213ENST00000492506 TMC6Q7Z403 805 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 AHI1Q8N157 1196 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 ARHGAP18Q8N392 663 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 EID2Q8N6I1 236 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 TAS1R2Q8TE23 839 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 LMLNQ96KR4 655 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 NIF3L1Q9GZT8 377 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 PABPC3Q9H361 631 aaKnown RBP13.62□□□□□ -0.23
HDAC3-213ENST00000492506 GGA2Q9UJY4 613 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 AK5Q9Y6K8 562 aa13.62□□□□□ -0.23
HDAC3-213ENST00000492506 TEX51A0A1B0GUA7 166 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 PES1O00541 588 aaKnown RBP13.61□□□□□ -0.23
HDAC3-213ENST00000492506 PDXKO00764 312 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 RRP8O43159 456 aaKnown RBP13.61□□□□□ -0.23
HDAC3-213ENST00000492506 CUTAO60888 179 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 HNRNPH1P31943 449 aaKnown RBP13.61□□□□□ -0.23
HDAC3-213ENST00000492506 CD70P32970 193 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 TLE3Q04726 772 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 PPP3CAQ08209 521 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 ZNF394Q53GI3 561 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 ADGRF1Q5T601 910 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 NCEH1Q6PIU2 408 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 KANSL1Q7Z3B3 1105 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 GPR155Q7Z3F1 870 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 GRAMD1CQ8IYS0 662 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 MAGEC3Q8TD91 643 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 TMA16Q96EY4 203 aaKnown RBP13.61□□□□□ -0.23
HDAC3-213ENST00000492506 FBXL12Q9NXK8 326 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 SUN2Q9UH99 717 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 SFMBT1Q9UHJ3 866 aa13.61□□□□□ -0.23
HDAC3-213ENST00000492506 HBS1LQ9Y450 684 aaKnown RBP13.61□□□□□ -0.23
HDAC3-213ENST00000492506 TDRD6O60522 2096 aaKnown RBP13.6□□□□□ -0.23
HDAC3-213ENST00000492506 FAM47DPA6NHR8 397 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 BRINP1O60477 761 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 ZBED1O96006 694 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 ITGAVP06756 1048 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 TRIM49P0CI25 452 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 TRIM49CP0CI26 452 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 ABCB4P21439 1286 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 EPHA8P29322 1005 aaPredicted RBP13.6□□□□□ -0.23
HDAC3-213ENST00000492506 AFMP43652 599 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 GCLMP48507 274 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 HARS2P49590 506 aaKnown RBP13.6□□□□□ -0.23
HDAC3-213ENST00000492506 VAMP7P51809 220 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 TKTL1P51854 596 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 RAD23BP54727 409 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 SFMBT2Q5VUG0 894 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 ARHGAP17Q68EM7 881 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 C11orf57Q6ZUT1 292 aaPredicted RBP13.6□□□□□ -0.23
HDAC3-213ENST00000492506 CACTIN-AS1Q8N1I8 211 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 SLC4A11Q8NBS3 891 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 RFFLQ8WZ73 363 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 BAP1Q92560 729 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 FGF11Q92914 225 aa13.6□□□□□ -0.23
HDAC3-213ENST00000492506 MIEF2Q96C03 454 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms