RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 RFC1P35251 1148 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-209ENST00000492270 PLK1P53350 603 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 CDH4P55283 916 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 RPS14P62263 151 aaKnown RBP25.4■■□□□ 1.66
UPF3A-209ENST00000492270 TPM4P67936 248 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 ZNF177Q13360 481 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-209ENST00000492270 ASIC2Q16515 512 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 HNRNPA1L2Q32P51 320 aaKnown RBP25.4■■□□□ 1.66
UPF3A-209ENST00000492270 FAM124AQ86V42 546 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 SYT12Q8IV01 421 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 C3orf20Q8ND61 904 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 MPP6Q9NZW5 540 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 PILRBQ9UKJ0 227 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 PCDH15Q96QU1 1955 aa25.4■■□□□ 1.66
UPF3A-209ENST00000492270 ITIH6Q6UXX5 1313 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 CHD5Q8TDI0 1954 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 TCRBV5S1A1TA0A578 114 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 LNP1A1A4G5 178 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 E9PAM4 449 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 CLDN11O75508 207 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 IGLV3-19P01714 112 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 PTPN9P43378 593 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 C1QBPQ07021 282 aaKnown RBP25.39■■□□□ 1.66
UPF3A-209ENST00000492270 RNF219Q5W0B1 726 aaPredicted RBP25.39■■□□□ 1.66
UPF3A-209ENST00000492270 ACAD10Q6JQN1 1059 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 KDM1BQ8NB78 822 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 FEM1AQ9BSK4 669 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 EDEM2Q9BV94 578 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 GPR174Q9BXC1 333 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 TBC1D30Q9Y2I9 924 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 OR51B4Q9Y5P0 310 aa25.39■■□□□ 1.66
UPF3A-209ENST00000492270 DCDC2BA2VCK2 349 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 TMCO5BA8MYB1 307 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 SLC30A4O14863 429 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 KHNYNO15037 678 aaKnown RBP25.38■■□□□ 1.65
UPF3A-209ENST00000492270 TNFAIP3P21580 790 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 SDHBP21912 280 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 SKOR2Q2VWA4 1001 aaPredicted RBP25.38■■□□□ 1.65
UPF3A-209ENST00000492270 SFMBT2Q5VUG0 894 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 PEAR1Q5VY43 1037 aaPredicted RBP25.38■■□□□ 1.65
UPF3A-209ENST00000492270 WDR59Q6PJI9 974 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 DGLUCYQ7Z3D6 616 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 TFAP2DQ7Z6R9 452 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 DNAAF5Q86Y56 855 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 MCOLN2Q8IZK6 566 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 FAM172AQ8WUF8 416 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 ZNF419Q96HQ0 510 aaPredicted RBP25.38■■□□□ 1.65
UPF3A-209ENST00000492270 C1orf74Q96LT6 269 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 HAPLN3Q96S86 360 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 RTKNQ9BST9 563 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 MAGEB5Q9BZ81 275 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 RSPH9Q9H1X1 276 aaPredicted RBP25.38■■□□□ 1.65
UPF3A-209ENST00000492270 HAUS4Q9H6D7 363 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 FBRSQ9HAH7 460 aa25.38■■□□□ 1.65
UPF3A-209ENST00000492270 IGLV3-10A0A075B6K4 115 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 SIGLEC16A6NMB1 481 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 DRGXA6NNA5 263 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 GOLGA6L19H0YKK7 550 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 SRGAP2O75044 1071 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 C7P10643 843 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 GPD1P21695 349 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 RRM1P23921 792 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 PBX1P40424 430 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 OXCT1P55809 520 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 HDAC4P56524 1084 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 IRX4P78413 519 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 ARID5BQ14865 1188 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 TRIM61Q5EBN2 209 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 C9orf64Q5T6V5 341 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 STPG1Q5TH74 334 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 ZNF776Q68DI1 518 aaPredicted RBP25.37■■□□□ 1.65
UPF3A-209ENST00000492270 DNAJC24Q6P3W2 148 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 LRRC31Q6UY01 552 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 ZNF571Q7Z3V5 609 aaPredicted RBP25.37■■□□□ 1.65
UPF3A-209ENST00000492270 CENPIQ92674 756 aaPredicted RBP25.37■■□□□ 1.65
UPF3A-209ENST00000492270 MCEEQ96PE7 176 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 TMEM51Q9NW97 253 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 AIPL1Q9NZN9 384 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 VPS28Q9UK41 221 aa25.37■■□□□ 1.65
UPF3A-209ENST00000492270 EDDM13A0A1B0GTR0 161 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 DNTTP04053 509 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 RHOCP08134 193 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 VAV1P15498 845 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 UBASH3AP57075 661 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 RPL7AP62424 266 aaKnown RBP25.36■■□□□ 1.65
UPF3A-209ENST00000492270 SULT2A1Q06520 285 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 STRADAQ7RTN6 431 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 CCDC185Q8N715 623 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 PTPRN2Q92932 1015 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 PSMB7Q99436 277 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 MUC3BQ9H195 1237 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 FSCN3Q9NQT6 498 aa25.36■■□□□ 1.65
UPF3A-209ENST00000492270 TP53BP1Q12888 1972 aaPredicted RBP25.36■■□□□ 1.65
UPF3A-209ENST00000492270 PLXNA2O75051 1894 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 CCP110O43303 1012 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 ATMINO43313 823 aaPredicted RBP25.35■■□□□ 1.65
UPF3A-209ENST00000492270 SKILP12757 684 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 MAOBP27338 520 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 OXTRP30559 389 aa25.35■■□□□ 1.65
UPF3A-209ENST00000492270 ACSL1P33121 698 aa25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms