RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 TDP1Q9NUW8 608 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 GDAP2Q9NXN4 497 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 SEL1LQ9UBV2 794 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 SIX4Q9UIU6 781 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 FBXO2Q9UK22 296 aaPredicted RBP6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 RAB23Q9ULC3 237 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 USP18Q9UMW8 372 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 SMC3Q9UQE7 1217 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 CCL26Q9Y258 94 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 PCDHB4Q9Y5E5 795 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 SRPRBQ9Y5M8 271 aaKnown RBP6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 CLIC4Q9Y696 253 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 PATJQ8NI35 1801 aa6.82□□□□□ -1.32
PRPF40A-210ENST00000489741 PDPK1O15530 556 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 TBCAO75347 108 aaKnown RBP6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 TADA3O75528 432 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 NOL4O94818 638 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 KRT18P05783 430 aaKnown RBP6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 ADRB1P08588 477 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 CSH1P0DML2 217 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 CSH2P0DML3 217 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 GAP43P17677 238 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 PNPLA4P41247 253 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 STAT5AP42229 794 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 CASP5P51878 434 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 IFRD2Q12894 506 aaPredicted RBP6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 NFE2Q16621 373 aaPredicted RBP6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 CFAP221Q4G0U5 840 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 TXNDC8Q6A555 127 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 FAM171BQ6P995 826 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 BRSK2Q8IWQ3 736 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 TMEM86AQ8N2M4 240 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 FAM26EQ8N5C1 309 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 LRRC52Q8N7C0 313 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 MAB21L3Q8N8X9 362 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 SPATA18Q8TC71 538 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 POMGNT1Q8WZA1 660 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 ZNF669Q96BR6 464 aaPredicted RBP6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 LOXL4Q96JB6 756 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 CLIC6Q96NY7 704 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 ACCSQ96QU6 501 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 GORASP1Q9BQQ3 440 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 FAM213AQ9BRX8 229 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 XYLT2Q9H1B5 865 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 ZHX3Q9H4I2 956 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 OLFML3Q9NRN5 406 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 THG1LQ9NWX6 298 aaKnown RBP6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 GCNT4Q9P109 453 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 NTMQ9P121 344 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 L1RE1Q9UN81 338 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 MIA3Q5JRA6 1907 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 SDK1Q7Z5N4 2213 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 CITO14578 2027 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 ASPMQ8IZT6 3477 aa6.81□□□□□ -1.32
PRPF40A-210ENST00000489741 USP24Q9UPU5 2620 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 A0A087X0B3 334 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 SH3D21A4FU49 640 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 FOXD2O60548 495 aaPredicted RBP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 LDHAP00338 332 aaKnown RBP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 ZNF806P0C7X5 589 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 ARSAP15289 507 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 CYP2F1P24903 491 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 AVPR1AP37288 418 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 MAGEA11P43364 429 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 LHX1P48742 406 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 GPR15P49685 360 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 LIMK1P53667 647 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 GRSF1Q12849 480 aaKnown RBP eCLIP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 RESTQ13127 1097 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 PDGFRLQ15198 375 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 ZNF77Q15935 545 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 SOWAHAQ2M3V2 549 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 YOD1Q5VVQ6 348 aaPredicted RBP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 RRAGBQ5VZM2 374 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 NAIF1Q69YI7 327 aaPredicted RBP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 TRIM68Q6AZZ1 485 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 DPH6Q7L8W6 267 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 OSTM1Q86WC4 334 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 CAMKK1Q8N5S9 505 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 CACTINQ8WUQ7 758 aaKnown RBP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 GAB3Q8WWW8 586 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 FUBP3Q96I24 572 aaKnown RBP eCLIP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 ZC3H10Q96K80 434 aaKnown RBP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 C20orf173Q96LM9 149 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 ZNF560Q96MR9 790 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 SLC22A12Q96S37 553 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 SPATA25Q9BR10 227 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 PI4K2AQ9BTU6 479 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 SPATA9Q9BWV2 254 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 FGFBP2Q9BYJ0 223 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 EBF3Q9H4W6 596 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 MRPL44Q9H9J2 332 aaKnown RBP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 KIF9Q9HAQ2 790 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 POLR3BQ9NW08 1133 aaPredicted RBP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 DDX43Q9NXZ2 648 aaKnown RBP6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 GTF3C4Q9UKN8 822 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 AGAP1Q9UPQ3 857 aa6.8□□□□□ -1.32
PRPF40A-210ENST00000489741 MSRB2Q9Y3D2 182 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms