RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	MYBL1	P10243	752 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	ALAS1	P13196	640 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	SLC5A1	P13866	664 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CDH2	P19022	906 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CCNC	P24863	283 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CA8	P35219	290 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CETN2	P41208	172 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	ALDH3B2	P48448	385 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	EIF2B2	P49770	351 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	STAT2	P52630	851 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	THOP1	P52888	689 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	PLTP	P55058	493 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	VCP	P55072	806 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	TPD52	P55327	224 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	C21orf59	P57076	290 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	ANTXR2	P58335	489 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	NAA20	P61599	178 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CTAG1A	P78358	180 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CDK16	Q00536	496 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	TFAP4	Q01664	338 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	GFPT1	Q06210	699 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CHRND	Q07001	517 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	THOC5	Q13769	683 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	APOF	Q13790	326 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	EPHA7	Q15375	998 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	PUM3	Q15397	648 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	GPR162	Q16538	588 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	PHKG1	Q16816	387 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	C15orf59	Q2T9L4	293 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	ANKDD1A	Q495B1	522 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	LRRC24	Q50LG9	513 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CAVIN4	Q5BKX8	364 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	RARS2	Q5T160	578 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	ATAD3B	Q5T9A4	648 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	NDUFAF5	Q5TEU4	345 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	TWF2	Q6IBS0	349 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	SPOPL	Q6IQ16	392 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	FBXL19	Q6PCT2	694 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	ZDHHC24	Q6UX98	284 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	DPP8	Q6V1X1	898 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	DSTYK	Q6XUX3	929 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	ATG9A	Q7Z3C6	839 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	NT5DC3	Q86UY8	548 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CABP7	Q86V35	215 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	MCF2L2	Q86YR7	1114 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	GRAMD2A	Q8IUY3	354 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	COLGALT2	Q8IYK4	626 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	GRAMD1C	Q8IYS0	662 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	PCYOX1L	Q8NBM8	494 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	NLGN2	Q8NFZ4	835 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	ZFP28	Q8NHY6	868 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	IGDCC4	Q8TDY8	1250 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	DENND1A	Q8TEH3	1009 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	C7orf26	Q96N11	449 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	PSMB7	Q99436	277 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	FERMT1	Q9BQL6	677 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	HEPH	Q9BQS7	1158 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	AIFM2	Q9BRQ8	373 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	C1orf50	Q9BV19	199 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	VPS33B	Q9H267	617 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	RNF41	Q9H4P4	317 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	POLD4	Q9HCU8	107 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	S100A14	Q9HCY8	104 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	CABP5	Q9NP86	173 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	TAS2R1	Q9NYW7	299 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	RABL2A	Q9UBK7	228 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	FBLN5	Q9UBX5	448 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	PCSK1N	Q9UHG2	260 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	SLC24A2	Q9UI40	661 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	DBR1	Q9UK59	544 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	FBXO9	Q9UK97	447 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	DNM3	Q9UQ16	869 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	RPTOR	Q8N122	1335 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	COL11A2	P13942	1736 aa	Predicted RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	ARFGEF1	Q9Y6D6	1849 aa		4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	BRCA1	P38398	1863 aa	Known RBP	4.86	□□□□□ -1.63
PTCD3-212	ENST00000477520	C15orf38-AP3S2	A0A0A6YYH1	394 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	FAM172BP	A6NC97	362 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	EIF4E1B	A6NMX2	242 aa	Known RBP	4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	EVPLL	A8MZ36	301 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520		H0Y8X5	98 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	BOLA2-SMG1P6	H3BVE0	249 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	KLF11	O14901	512 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	KLRC4	O43908	158 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	FAM189A1	O60320	539 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	CCNT2	O60583	730 aa	Known RBP	4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	TSPAN1	O60635	241 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	BMP10	O95393	424 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	SMIM18	P0DKX4	95 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	GLI4	P10075	376 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	MYL4	P12829	197 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	P4HA1	P13674	534 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	TSHR	P16473	764 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	KRT15	P19012	456 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	CTNNA2	P26232	953 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	CSTF2	P33240	577 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	NUDT1	P36639	197 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	FDFT1	P37268	417 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	UBA7	P41226	1012 aa		4.85	□□□□□ -1.63
PTCD3-212	ENST00000477520	HSD17B4	P51659	736 aa		4.85	□□□□□ -1.63

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