RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 HOXB4P17483 251 aaPredicted RBP8.35□□□□□ -1.07
USP54-211ENST00000474929 PDCP20941 246 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 MAT2AP31153 395 aaKnown RBP8.35□□□□□ -1.07
USP54-211ENST00000474929 MAPK10P53779 464 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 CACNA2D1P54289 1103 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 TNNC1P63316 161 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 EHHADHQ08426 723 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 TRIM29Q14134 588 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 ZRANB3Q5FWF4 1079 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 KIAA0907Q7Z7F0 614 aaPredicted RBP8.35□□□□□ -1.07
USP54-211ENST00000474929 B3GNT8Q7Z7M8 397 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 ADIPOR2Q86V24 386 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 ZSCAN30Q86W11 494 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 AADATQ8N5Z0 425 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 OR13H1Q8NG92 308 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 PRR7Q8TB68 274 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 POMGNT1Q8WZA1 660 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 NKD1Q969G9 470 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 PLD4Q96BZ4 506 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 HVCN1Q96D96 273 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 P2RY11Q96G91 374 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 TNIP3Q96KP6 325 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 LURAP1Q96LR2 239 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 MED10Q9BTT4 135 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 UNKQ9C0B0 810 aaKnown RBP8.35□□□□□ -1.07
USP54-211ENST00000474929 PARVGQ9HBI0 331 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 PNPLA8Q9NP80 782 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 LATS2Q9NRM7 1088 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.35□□□□□ -1.07
USP54-211ENST00000474929 RBAKQ9NYW8 714 aaPredicted RBP8.35□□□□□ -1.07
USP54-211ENST00000474929 CLIC5Q9NZA1 410 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 ERRFI1Q9UJM3 462 aaPredicted RBP8.35□□□□□ -1.07
USP54-211ENST00000474929 ITGB1BP2Q9UKP3 347 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 AGO1Q9UL18 857 aaKnown RBP8.35□□□□□ -1.07
USP54-211ENST00000474929 PPM1HQ9ULR3 514 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 PADI4Q9UM07 663 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 SCML2Q9UQR0 700 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 PCDHGA3Q9Y5H0 932 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 CSMD2Q7Z408 3487 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 ITIH6Q6UXX5 1313 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 TYW5A2RUC4 315 aaKnown RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 A8MXQ7 604 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 C1QTNF3-AMACRE9PGA6 284 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 PRPF6O94906 941 aaKnown RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 TBX18O95935 607 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 IL1BP01584 269 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 ANXA6P08133 673 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 SRPRAP08240 638 aaKnown RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 SLFN14P0C7P3 912 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 CD1EP15812 388 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 ITIH1P19827 911 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 ITGA3P26006 1051 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 MZF1P28698 734 aaPredicted RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 NNMTP40261 264 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 HDAC4P56524 1084 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 DEFB133Q30KQ1 61 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 MPP7Q5T2T1 576 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 RNF219Q5W0B1 726 aaPredicted RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 SLC39A4Q6P5W5 647 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 KYAT3Q6YP21 454 aaKnown RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 DYMQ7RTS9 669 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 ABI3BPQ7Z7G0 1075 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 CCDC117Q8IWD4 279 aaPredicted RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 DIS3L2Q8IYB7 885 aaKnown RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 CACNA2D3Q8IZS8 1091 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 ARL10Q8N8L6 244 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 SYT2Q8N9I0 419 aaPredicted RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 CXorf38Q8TB03 319 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 PDCD6IPQ8WUM4 868 aaKnown RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 SCG3Q8WXD2 468 aaKnown RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 SPAG5Q96R06 1193 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 CGRRF1Q99675 332 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 B3GNT5Q9BYG0 378 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 MTMR12Q9C0I1 747 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 GPN2Q9H9Y4 310 aaPredicted RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 KRT82Q9NSB4 513 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 TMEM30AQ9NV96 361 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 RASAL2Q9UJF2 1139 aa8.34□□□□□ -1.07
USP54-211ENST00000474929 TDRD6O60522 2096 aaKnown RBP8.34□□□□□ -1.07
USP54-211ENST00000474929 NIPBLQ6KC79 2804 aaeCLIP8.34□□□□□ -1.07
USP54-211ENST00000474929 SPTY2D1-AS1A0A0U1RR47 76 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 M0QYT0 321 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 HGSO14964 777 aaPredicted RBP8.33□□□□□ -1.08
USP54-211ENST00000474929 LRCH4O75427 683 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 RFPL1O75677 317 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 AP1G2O75843 785 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 FAM13AO94988 1023 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 MOCS3O95396 460 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 RPLP0P05388 317 aaKnown RBP8.33□□□□□ -1.08
USP54-211ENST00000474929 CPA1P15085 419 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 MAN1A1P33908 653 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 DRD3P35462 400 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 NOP2P46087 812 aaKnown RBP8.33□□□□□ -1.08
USP54-211ENST00000474929 RABIFP47224 123 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 GTF2BQ00403 316 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 RAD51AP2Q09MP3 1159 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 SURF1Q15526 300 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 TESK1Q15569 626 aa8.33□□□□□ -1.08
USP54-211ENST00000474929 EIF2S3LQ2VIR3 472 aaKnown RBP8.33□□□□□ -1.08
USP54-211ENST00000474929 POM121L1PQ3SYA9 428 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms