RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 TUBP50607 506 aa18.71■□□□□ 0.59
COL9A3-205ENST00000466192 MLLT6P55198 1093 aaPredicted RBP18.71■□□□□ 0.59
COL9A3-205ENST00000466192 TBX4P57082 545 aa18.71■□□□□ 0.59
COL9A3-205ENST00000466192 USP41Q3LFD5 358 aa18.71■□□□□ 0.59
COL9A3-205ENST00000466192 ARHGAP36Q6ZRI8 547 aa18.71■□□□□ 0.59
COL9A3-205ENST00000466192 TMCO2Q7Z6W1 182 aaPredicted RBP18.71■□□□□ 0.59
COL9A3-205ENST00000466192 LRRC6Q86X45 466 aa18.71■□□□□ 0.59
COL9A3-205ENST00000466192 RNF168Q8IYW5 571 aaPredicted RBP18.71■□□□□ 0.59
COL9A3-205ENST00000466192 C2orf15Q8WU43 125 aaKnown RBP18.71■□□□□ 0.59
COL9A3-205ENST00000466192 IGSF21Q96ID5 467 aa18.71■□□□□ 0.59
COL9A3-205ENST00000466192 AGAP3Q96P47 875 aa18.71■□□□□ 0.59
COL9A3-205ENST00000466192 TLR8Q9NR97 1041 aaKnown RBP18.71■□□□□ 0.59
COL9A3-205ENST00000466192 MTRRQ9UBK8 725 aa18.71■□□□□ 0.59
COL9A3-205ENST00000466192 MTSS1O43312 755 aa18.7■□□□□ 0.58
COL9A3-205ENST00000466192 MT-ND3P03897 115 aa18.7■□□□□ 0.58
COL9A3-205ENST00000466192 CRADDP78560 199 aa18.7■□□□□ 0.58
COL9A3-205ENST00000466192 NRG1Q02297 640 aaPredicted RBP18.7■□□□□ 0.58
COL9A3-205ENST00000466192 TEX44Q53QW1 395 aa18.7■□□□□ 0.58
COL9A3-205ENST00000466192 ICE2Q659A1 982 aa18.7■□□□□ 0.58
COL9A3-205ENST00000466192 SLC8B1Q6J4K2 584 aa18.7■□□□□ 0.58
COL9A3-205ENST00000466192 SLC26A11Q86WA9 606 aa18.7■□□□□ 0.58
COL9A3-205ENST00000466192 CATSPERBQ9H7T0 1116 aa18.7■□□□□ 0.58
COL9A3-205ENST00000466192 MPP6Q9NZW5 540 aa18.7■□□□□ 0.58
COL9A3-205ENST00000466192 DFFAO00273 331 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 TRDMT1O14717 391 aaKnown RBP18.69■□□□□ 0.58
COL9A3-205ENST00000466192 CLTBP09497 229 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 PRKCHP24723 683 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 OR1D2P34982 312 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 OLIG2Q13516 323 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 ITIH4Q14624 930 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 PSMD5Q16401 504 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 HHATQ5VTY9 493 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 CASC4Q6P4E1 433 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 TRMT10BQ6PF06 316 aaKnown RBP18.69■□□□□ 0.58
COL9A3-205ENST00000466192 LVRNQ6Q4G3 990 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 GSDMBQ8TAX9 411 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 SERAC1Q96JX3 654 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 C1orf74Q96LT6 269 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 SSU72Q9NP77 194 aaKnown RBP18.69■□□□□ 0.58
COL9A3-205ENST00000466192 SMYD2Q9NRG4 433 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 GSTA2P09210 222 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 SLC2A3P11169 496 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 PSEN1P49768 467 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 SESN2P58004 480 aaPredicted RBP18.69■□□□□ 0.58
COL9A3-205ENST00000466192 RPL10AP62906 217 aaKnown RBP18.69■□□□□ 0.58
COL9A3-205ENST00000466192 DNAJC3Q13217 504 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 SPRED3Q2MJR0 410 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 C10orf120Q5SQS8 335 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 FAM47EQ6ZV65 393 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 MIB1Q86YT6 1006 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 BANPQ8N9N5 519 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 TCP10LQ8TDR4 215 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 SPOCK2Q92563 424 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 TOP1MTQ969P6 601 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 SLC39A8Q9C0K1 460 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 GBA3Q9H227 469 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 C12orf65Q9H3J6 166 aaKnown RBP18.69■□□□□ 0.58
COL9A3-205ENST00000466192 PCDH10Q9P2E7 1040 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 TRHDEQ9UKU6 1024 aa18.69■□□□□ 0.58
COL9A3-205ENST00000466192 SLC38A8A6NNN8 435 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 C2CD2LO14523 706 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 UGT1A9O60656 530 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 ZWINTO95229 277 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 OAS1P00973 400 aaKnown RBP18.68■□□□□ 0.58
COL9A3-205ENST00000466192 JCHAINP01591 159 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 ITGB8P26012 769 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 MGAT1P26572 445 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 SEPT7Q16181 437 aaKnown RBP18.68■□□□□ 0.58
COL9A3-205ENST00000466192 ZNF683Q8IZ20 524 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 ARNTL2Q8WYA1 636 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 STAMBPL1Q96FJ0 436 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 TEKT5Q96M29 485 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 TSGA13Q96PP4 275 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 VAT1Q99536 393 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 UGT1A7Q9HAW7 530 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 UGT1A10Q9HAW8 530 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 UGT1A8Q9HAW9 530 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 COMMD8Q9NX08 183 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 MARCH2Q9P0N8 246 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 VANGL2Q9ULK5 521 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 USP15Q9Y4E8 981 aaPredicted RBP18.68■□□□□ 0.58
COL9A3-205ENST00000466192 PCDHA11Q9Y5I1 949 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 BACE2Q9Y5Z0 518 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 SDR42E2A6NKP2 422 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 ZDHHC11BP0C7U3 371 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 NFKB1P19838 968 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 COG7P83436 770 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 ZNF33AQ06730 810 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 TRIP4Q15650 581 aaPredicted RBP18.68■□□□□ 0.58
COL9A3-205ENST00000466192 LRRC26Q2I0M4 334 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 MS4A13Q5J8X5 152 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 FAM117BQ6P1L5 589 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 LZTR1Q8N653 840 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 CNTD1Q8N815 330 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 RTL3Q8N8U3 475 aaKnown RBP18.68■□□□□ 0.58
COL9A3-205ENST00000466192 CCT6BQ92526 530 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 ALKBH8Q96BT7 664 aaKnown RBP18.68■□□□□ 0.58
COL9A3-205ENST00000466192 PITPNM3Q9BZ71 974 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 CCSER2Q9H7U1 834 aa18.68■□□□□ 0.58
COL9A3-205ENST00000466192 OLA1Q9NTK5 396 aaKnown RBP18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms