RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 FGF14Q92915 247 aa11.29□□□□□ -0.6
SCN9A-205ENST00000454569 SMARCD2Q92925 531 aa11.29□□□□□ -0.6
SCN9A-205ENST00000454569 MAGOHBQ96A72 148 aaKnown RBP11.29□□□□□ -0.6
SCN9A-205ENST00000454569 LRRC1Q9BTT6 524 aa11.29□□□□□ -0.6
SCN9A-205ENST00000454569 ZYG11BQ9C0D3 744 aa11.29□□□□□ -0.6
SCN9A-205ENST00000454569 SLC39A8Q9C0K1 460 aa11.29□□□□□ -0.6
SCN9A-205ENST00000454569 PPARGC1AQ9UBK2 798 aaKnown RBP11.29□□□□□ -0.6
SCN9A-205ENST00000454569 AMACRQ9UHK6 382 aa11.29□□□□□ -0.6
SCN9A-205ENST00000454569 TCF20Q9UGU0 1960 aaKnown RBP11.29□□□□□ -0.6
SCN9A-205ENST00000454569 ANKRD36A6QL64 1941 aa11.29□□□□□ -0.6
SCN9A-205ENST00000454569 HEPACAM2A8MVW5 462 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 WASH4PA8MWX3 477 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 MBTPS2O43462 519 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TBL1XO60907 577 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 PHF2O75151 1096 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 ETS1P14921 441 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TCF3P15923 654 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 CETN2P41208 172 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 MTHFRP42898 656 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 GDF10P55107 478 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 CKAP4Q07065 602 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TFDP2Q14188 446 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 OASLQ15646 514 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 AFMIDQ63HM1 303 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TMCO3Q6UWJ1 677 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 ADGRG2Q8IZP9 1017 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 CELF5Q8N6W0 485 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 CEP112Q8N8E3 955 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 RTL3Q8N8U3 475 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 C12orf50Q8NA57 414 aaPredicted RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TDRD5Q8NAT2 981 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 RSAD2Q8WXG1 361 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 RIPOR3Q96MK2 946 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 KCNK17Q96T54 332 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 LGMNQ99538 433 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 KXD1Q9BQD3 176 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 LRRC19Q9H756 370 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TRPV4Q9HBA0 871 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TMEM248Q9NWD8 314 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 GDE1Q9NZC3 331 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 LSM7Q9UK45 103 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 KIAA1549LQ6ZVL6 1849 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 A0A0D9SEW6 157 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 ZSCAN5CA6NGD5 496 aaPredicted RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TRIM24O15164 1050 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 RAD51CO43502 376 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 LATS1O95835 1130 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 ZSCAN5DPP0CG00 497 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 ARSAP15289 507 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 VAV1P15498 845 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 RHOQP17081 205 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TGM2P21980 687 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 HOXD9P28356 352 aaPredicted RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 ACVRL1P37023 503 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 EIF3EP60228 445 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 SLC7A5Q01650 507 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TNK2Q07912 1038 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 GRM2Q14416 872 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TRADDQ15628 312 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 CCNG2Q16589 344 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 FYB2Q5VWT5 728 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 CXorf57Q6NSI4 855 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 RHBDF2Q6PJF5 856 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 CCDC137Q6PK04 289 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 LRRC31Q6UY01 552 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 CPXM2Q8N436 756 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 MMGT1Q8N4V1 131 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 P3H4Q92791 437 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TMA16Q96EY4 203 aaKnown RBP11.28□□□□□ -0.6
SCN9A-205ENST00000454569 OLFM3Q96PB7 478 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 TMEM121Q9BTD3 319 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 USP29Q9HBJ7 922 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 ACTL7AQ9Y615 435 aa11.28□□□□□ -0.6
SCN9A-205ENST00000454569 SMAPO00193 183 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 TTI1O43156 1089 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 CTIFO43310 598 aaKnown RBP11.27□□□□□ -0.61
SCN9A-205ENST00000454569 RBP3P10745 1247 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 GLDCP23378 1020 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 RBL1P28749 1068 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 TFF2Q03403 129 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 MESP2Q0VG99 397 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 EML3Q32P44 896 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 LY6G5CQ5SRR4 150 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 TEX35Q5T0J7 233 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 NAIF1Q69YI7 327 aaPredicted RBP11.27□□□□□ -0.61
SCN9A-205ENST00000454569 LEKR1Q6ZMV7 388 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 DDX42Q86XP3 938 aaKnown RBP eCLIP11.27□□□□□ -0.61
SCN9A-205ENST00000454569 OR7D4Q8NG98 312 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 BPIFB1Q8TDL5 484 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 HMCESQ96FZ2 354 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 ZNF419Q96HQ0 510 aaPredicted RBP11.27□□□□□ -0.61
SCN9A-205ENST00000454569 NAP1L3Q99457 506 aaPredicted RBP11.27□□□□□ -0.61
SCN9A-205ENST00000454569 TRIM51Q9BSJ1 452 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 CATSPERBQ9H7T0 1116 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 TMEM51Q9NW97 253 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 DMGDHQ9UI17 866 aaKnown RBP11.27□□□□□ -0.61
SCN9A-205ENST00000454569 COL4A2P08572 1712 aa11.27□□□□□ -0.61
SCN9A-205ENST00000454569 EFCAB8A8MWE9 144 aa11.26□□□□□ -0.61
SCN9A-205ENST00000454569 C2CD4DB7Z1M9 353 aa11.26□□□□□ -0.61
SCN9A-205ENST00000454569 CCDC188H7C350 402 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms