RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 PIGKQ92643 395 aa13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 CENPIQ92674 756 aaPredicted RBP13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 TCEAL3Q969E4 200 aa13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 RPL10LQ96L21 214 aaKnown RBP13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 SELENOOQ9BVL4 669 aa13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 HAUS4Q9H6D7 363 aa13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 TMEM74BQ9NUR3 256 aa13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 TAS2R14Q9NYV8 317 aa13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 TBC1D30Q9Y2I9 924 aa13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 GON4LQ3T8J9 2241 aa13.12□□□□□ -0.31
PRPF40A-203ENST00000448428 NYNRINQ9P2P1 1898 aaKnown RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 IGLV3-10A0A075B6K4 115 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 TMCO5BA8MYB1 307 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 PATE3B3GLJ2 98 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 E9PAM4 449 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 SRGAP2O75044 1071 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 SIN3BO75182 1162 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 NDUFS2O75306 463 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 ACADMP11310 421 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 SKILP12757 684 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 GPD1P21695 349 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 SDHBP21912 280 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 ITPKAP23677 461 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 CD6P30203 668 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 OXTRP30559 389 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 ADRA1BP35368 520 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 PRKCIP41743 596 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 STK19P49842 368 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 RPS14P62263 151 aaKnown RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 RPL7AP62424 266 aaKnown RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 ZNF33AQ06730 810 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 PUM1Q14671 1186 aaKnown RBP eCLIP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 AASDHQ4L235 1098 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 ACBD5Q5T8D3 534 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 RNF219Q5W0B1 726 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 LYSMD4Q5XG99 296 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 STRADAQ7RTN6 431 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 ZNF571Q7Z3V5 609 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 SYT12Q8IV01 421 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 NETO1Q8TDF5 533 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 TOE1Q96GM8 510 aaKnown RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 ZNF419Q96HQ0 510 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 PPP1R9BQ96SB3 815 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 NUP58Q9BVL2 599 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 MAGEB5Q9BZ81 275 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 WSB2Q9NYS7 404 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 MPP6Q9NZW5 540 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 PILRBQ9UKJ0 227 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 OR51B4Q9Y5P0 310 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 WDR87Q6ZQQ6 2873 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 ADAMTS9Q9P2N4 1935 aa13.11□□□□□ -0.31
PRPF40A-203ENST00000448428 TARSL2A2RTX5 802 aaKnown RBP13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 KHNYNO15037 678 aaKnown RBP13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 IGLV3-19P01714 112 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 RRM1P23921 792 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 HDAC4P56524 1084 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 IRX4P78413 519 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 SULT2A1Q06520 285 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 KLHL30Q0D2K2 578 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 PPP1R15BQ5SWA1 713 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 C9orf64Q5T6V5 341 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 DNAJC24Q6P3W2 148 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 DNAAF5Q86Y56 855 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 FAM172AQ8WUF8 416 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 PTPRN2Q92932 1015 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 VCPIP1Q96JH7 1222 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 GPR174Q9BXC1 333 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 RSPH9Q9H1X1 276 aaPredicted RBP13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 FBRSQ9HAH7 460 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 IFNKQ9P0W0 207 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 CDV3Q9UKY7 258 aaKnown RBP13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 NUMA1Q14980 2115 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 ITIH6Q6UXX5 1313 aa13.1□□□□□ -0.31
PRPF40A-203ENST00000448428 EDDM13A0A1B0GTR0 161 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 A0A1W2PQJ5 194 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 DDX3XO00571 662 aaKnown RBP eCLIP13.09□□□□□ -0.311e-15■■□□□ 12.1
PRPF40A-203ENST00000448428 SLC30A4O14863 429 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 GZMAP12544 262 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 NNMTP40261 264 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 ZNF143P52747 638 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 ZBTB16Q05516 673 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 ARL13BQ3SXY8 428 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 ZNF776Q68DI1 518 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 TFAP2DQ7Z6R9 452 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 SETD3Q86TU7 594 aaPredicted RBP13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 FAM124AQ86V42 546 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 CCDC185Q8N715 623 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 CPLX3Q8WVH0 158 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 HSPA12BQ96MM6 686 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 MCEEQ96PE7 176 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 FAM129BQ96TA1 746 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 PSMB7Q99436 277 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 ZYG11BQ9C0D3 744 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 MUC3BQ9H195 1237 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 OSBPL2Q9H1P3 480 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 ZNF212Q9UDV6 495 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 OR12D3Q9UGF7 316 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 VPS28Q9UK41 221 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 DMXL1Q9Y485 3027 aa13.09□□□□□ -0.31
PRPF40A-203ENST00000448428 ATXN2Q99700 1313 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms