RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 CREB3O43889 395 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 LRIG2O94898 1065 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 LMNAP02545 664 aaKnown RBP19.18■□□□□ 0.66
SHH-204ENST00000441114 ASLP04424 464 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 CYP1A2P05177 515 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 OR1E1P30953 314 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 CNR2P34972 360 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 ECT2LQ008S8 904 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 ENPP2Q13822 863 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 USP39Q53GS9 565 aaKnown RBP19.18■□□□□ 0.66
SHH-204ENST00000441114 ARTNQ5T4W7 220 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 ASCL5Q7RTU5 278 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 ARFGAP1Q8N6T3 406 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 FNIP1Q8TF40 1166 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 GAB3Q8WWW8 586 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 RLN3Q8WXF3 142 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 TBC1D31Q96DN5 1066 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 FEM1AQ9BSK4 669 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 SEMA4AQ9H3S1 761 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 MTG2Q9H4K7 406 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 CTTNBP2NLQ9P2B4 639 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 PPARGC1AQ9UBK2 798 aaKnown RBP19.18■□□□□ 0.66
SHH-204ENST00000441114 ANAPC7Q9UJX3 599 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 VPS28Q9UK41 221 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 TBC1D30Q9Y2I9 924 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 CACNA1HO95180 2353 aa19.18■□□□□ 0.66
SHH-204ENST00000441114 CKAP5Q14008 2032 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 PRPSAP2O60256 369 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 H2AFZP0C0S5 128 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 NDUFV2P19404 249 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 MIPP30301 263 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 STK19P49842 368 aaPredicted RBP19.17■□□□□ 0.66
SHH-204ENST00000441114 MRE11P49959 708 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 SCAPQ12770 1279 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 C6orf118Q5T5N4 469 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 KIAA1324Q6UXG2 1013 aaKnown RBP19.17■□□□□ 0.66
SHH-204ENST00000441114 H2AFVQ71UI9 128 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 CACUL1Q86Y37 369 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 CTNNBL1Q8WYA6 563 aaPredicted RBP19.17■□□□□ 0.66
SHH-204ENST00000441114 ALG14Q96F25 216 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 MRGPRX3Q96LB0 322 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 PEBP4Q96S96 227 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 PPP1R9BQ96SB3 815 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 TMEM245Q9H330 911 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 SLCO3A1Q9UIG8 710 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 RAB23Q9ULC3 237 aa19.17■□□□□ 0.66
SHH-204ENST00000441114 PRR23AA6NEV1 266 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 GFRA3O60609 400 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 PLK1P53350 603 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 NRG1Q02297 640 aaPredicted RBP19.16■□□□□ 0.66
SHH-204ENST00000441114 ERMARDQ5T6L9 678 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 MANEALQ5VSG8 457 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 SETD3Q86TU7 594 aaPredicted RBP19.16■□□□□ 0.66
SHH-204ENST00000441114 SUMF1Q8NBK3 374 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 OR7D4Q8NG98 312 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 ZNF564Q8TBZ8 553 aaPredicted RBP19.16■□□□□ 0.66
SHH-204ENST00000441114 SPON2Q9BUD6 331 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 SNRNP25Q9BV90 132 aaKnown RBP19.16■□□□□ 0.66
SHH-204ENST00000441114 EPC1Q9H2F5 836 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 DHX35Q9H5Z1 703 aaKnown RBP19.16■□□□□ 0.66
SHH-204ENST00000441114 CD248Q9HCU0 757 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 SUN2Q9UH99 717 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 IP6K2Q9UHH9 426 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 DNAI1Q9UI46 699 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 SLC25A13Q9UJS0 675 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 AP4E1Q9UPM8 1137 aa19.16■□□□□ 0.66
SHH-204ENST00000441114 SMG5Q9UPR3 1016 aaKnown RBP19.16■□□□□ 0.66
SHH-204ENST00000441114 A0A0D9SEW6 157 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 TTC34A8MYJ7 566 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 LRCH4O75427 683 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 SRPRAP08240 638 aaKnown RBP19.15■□□□□ 0.66
SHH-204ENST00000441114 RHOQP17081 205 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 EPHB2P29323 1055 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 L1CAMP32004 1257 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 NNMTP40261 264 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 SSR1P43307 286 aaKnown RBP19.15■□□□□ 0.66
SHH-204ENST00000441114 AIF1P55008 147 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 SULT2A1Q06520 285 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 PIGHQ14442 188 aaPredicted RBP19.15■□□□□ 0.66
SHH-204ENST00000441114 CA9Q16790 459 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 KBTBD6Q86V97 674 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 FAM160A2Q8N612 972 aaPredicted RBP19.15■□□□□ 0.66
SHH-204ENST00000441114 FRMD1Q8N878 549 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 SPC24Q8NBT2 197 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 MYO19Q96H55 970 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 MRGPRX1Q96LB2 322 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 EPAS1Q99814 870 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 HINFPQ9BQA5 517 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 ZWILCHQ9H900 591 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 PRDM16Q9HAZ2 1276 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 PRSS16Q9NQE7 514 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 NDFIP2Q9NV92 336 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 USP18Q9UMW8 372 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 OR51B4Q9Y5P0 310 aa19.15■□□□□ 0.66
SHH-204ENST00000441114 THADAQ6YHU6 1953 aa19.14■□□□□ 0.65
SHH-204ENST00000441114 MYO1FO00160 1098 aa19.14■□□□□ 0.65
SHH-204ENST00000441114 SNAP91O60641 907 aa19.14■□□□□ 0.65
SHH-204ENST00000441114 TMEM253P0C7T8 217 aa19.14■□□□□ 0.65
SHH-204ENST00000441114 KRT83P78385 493 aa19.14■□□□□ 0.65
SHH-204ENST00000441114 ACCSLQ4AC99 568 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms