RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 FNIP1Q8TF40 1166 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 CPB2Q96IY4 423 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 STN1Q9H668 368 aaKnown RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 ACAD9Q9H845 621 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 WARS2Q9UGM6 360 aaKnown RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 MID2Q9UJV3 735 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 RAB26Q9ULW5 256 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 GJA3Q9Y6H8 435 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 ATAD5Q96QE3 1844 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 KIF13BQ9NQT8 1826 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 FAM149AA5PLN7 773 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 LACTBL1A8MY62 500 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 HDAC3O15379 428 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 MAFGO15525 162 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 C2P06681 752 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 ZFXP17010 805 aaPredicted RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 PTPN1P18031 435 aaKnown RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 GNL1P36915 607 aaPredicted RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 RPL14P50914 215 aaKnown RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 STX1BP61266 288 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 DCAF6Q58WW2 860 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 FAM91A1Q658Y4 838 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 RSBN1LQ6PCB5 846 aaPredicted RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 MPZL3Q6UWV2 235 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 SH2D5Q6ZV89 423 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 AFAP1L2Q8N4X5 818 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 PQLC3Q8N755 202 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.24□□□□□ -0.93
COPB1-202ENST00000439561 ADCY4Q8NFM4 1077 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 ACE2Q9BYF1 805 aaPredicted RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 TIMMDC1Q9NPL8 285 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 PFDN4Q9NQP4 134 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 ZDHHC7Q9NXF8 308 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 CLEC11AQ9Y240 323 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 ATP6AP2A0A1C7CYW4 349 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 HMX2A2RU54 273 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 KCNU1A8MYU2 1149 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 ATP6AP2O75787 350 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 CCDC166P0CW27 439 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 SMIM18P0DKX4 95 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 HNRNPLP14866 589 aaKnown RBP eCLIP9.24□□□□□ -0.932e-6■□□□□ 8.3
COPB1-202ENST00000439561 CD1EP15812 388 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 TSPAN8P19075 237 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 MAP4P27816 1152 aaKnown RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 SULT1E1P49888 294 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 SLC5A3P53794 718 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 SNX16P57768 344 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 MS4A2Q01362 244 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 SNAPC2Q13487 334 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 CCDC153Q494R4 210 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 OGFRL1Q5TC84 451 aaPredicted RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 GPR107Q5VW38 600 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 NUP93Q8N1F7 819 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 URGCPQ8TCY9 931 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 KCTD4Q8WVF5 259 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 PBXIP1Q96AQ6 731 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 APBA2Q99767 749 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 MRPL46Q9H2W6 279 aaKnown RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 DHX33Q9H6R0 707 aaKnown RBP9.24□□□□□ -0.93
COPB1-202ENST00000439561 PNPLA8Q9NP80 782 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 CHST12Q9NRB3 414 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 EMCNQ9ULC0 261 aa9.24□□□□□ -0.93
COPB1-202ENST00000439561 C2CD4BA6NLJ0 364 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 TMEM233B4DJY2 109 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 STAG3L1P0CL83 205 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 HSPA8P11142 646 aaKnown RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 SLC5A2P31639 672 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 PPARGP37231 505 aaPredicted RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 PSME3P61289 254 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 CEACAM7Q14002 265 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 TMEM132DQ14C87 1099 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 HABP4Q5JVS0 413 aaKnown RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 KLHL35Q6PF15 583 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 NIM1KQ8IY84 436 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 AHI1Q8N157 1196 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 MARVELD2Q8N4S9 558 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 ACMSDQ8TDX5 336 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 NDRG1Q92597 394 aaKnown RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 GFM2Q969S9 779 aaKnown RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 HDAC11Q96DB2 347 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 MFSD3Q96ES6 412 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 ZNF512Q96ME7 567 aaPredicted RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 PLEKHG4BQ96PX9 1271 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 ACO2Q99798 780 aaKnown RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 LPIN3Q9BQK8 851 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 LHX5Q9H2C1 402 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 TSPYL2Q9H2G4 693 aaPredicted RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 VANGL2Q9ULK5 521 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 PRPF19Q9UMS4 504 aaKnown RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 PCDHB12Q9Y5F1 795 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 A0A0A0MRY4 1105 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 YDJCA8MPS7 323 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 ZBBXA8MT70 800 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 IMPDH2P12268 514 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 HDCP19113 662 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 TFEBP19484 476 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 GRIA3P42263 894 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 SP2Q02086 613 aa9.23□□□□□ -0.93
COPB1-202ENST00000439561 PABPC1LQ4VXU2 614 aaKnown RBP9.23□□□□□ -0.93
COPB1-202ENST00000439561 PMF1Q6P1K2 205 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms