RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TMCO5BA8MYB1 307 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 E9PAM4 449 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 SRGAP2O75044 1071 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 CNTN5O94779 1100 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 DESP17661 470 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 CD6P30203 668 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 PBX1P40424 430 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 PTGER3P43115 390 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 CTSOP43234 321 aaPredicted RBP15.63■□□□□ 0.09
LIMS3-201ENST00000437679 TPMTP51580 245 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 SF3A2Q15428 464 aaKnown RBP15.63■□□□□ 0.09
LIMS3-201ENST00000437679 HNRNPA1L2Q32P51 320 aaKnown RBP15.63■□□□□ 0.09
LIMS3-201ENST00000437679 SH3PXD2AQ5TCZ1 1133 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 DCUN1D2Q6PH85 259 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 ZNF571Q7Z3V5 609 aaPredicted RBP15.63■□□□□ 0.09
LIMS3-201ENST00000437679 ZNF683Q8IZ20 524 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 DEFB119Q8N690 84 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 CENPIQ92674 756 aaPredicted RBP15.63■□□□□ 0.09
LIMS3-201ENST00000437679 RMDN1Q96DB5 314 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 TOE1Q96GM8 510 aaKnown RBP15.63■□□□□ 0.09
LIMS3-201ENST00000437679 MCEEQ96PE7 176 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 FEM1AQ9BSK4 669 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 MUC3BQ9H195 1237 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 SMOC1Q9H4F8 434 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 CD93Q9NPY3 652 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 TAS2R14Q9NYV8 317 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 VPS28Q9UK41 221 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 TBC1D30Q9Y2I9 924 aa15.63■□□□□ 0.09
LIMS3-201ENST00000437679 PI4KAP42356 2102 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 IGLV3-10A0A075B6K4 115 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 EDDM13A0A1B0GTR0 161 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.62■□□□□ 0.09
LIMS3-201ENST00000437679 TCRBV5S1A1TA0A578 114 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 TARSL2A2RTX5 802 aaKnown RBP15.62■□□□□ 0.09
LIMS3-201ENST00000437679 KHNYNO15037 678 aaKnown RBP15.62■□□□□ 0.09
LIMS3-201ENST00000437679 RNASEH1O60930 286 aaKnown RBP15.62■□□□□ 0.09
LIMS3-201ENST00000437679 DNTTP04053 509 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 RHOCP08134 193 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 GZMAP12544 262 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 SKILP12757 684 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 RRM1P23921 792 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 ADRA1BP35368 520 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 NUMBP49757 651 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 ZBTB16Q05516 673 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 ZNF33AQ06730 810 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 PUM1Q14671 1186 aaKnown RBP eCLIP15.62■□□□□ 0.09
LIMS3-201ENST00000437679 ARID5BQ14865 1188 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 ALFQ53S48 1182 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 E4F1Q66K89 784 aaPredicted RBP15.62■□□□□ 0.09
LIMS3-201ENST00000437679 ZNF776Q68DI1 518 aaPredicted RBP15.62■□□□□ 0.09
LIMS3-201ENST00000437679 LRSAM1Q6UWE0 723 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 SYT12Q8IV01 421 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 NETO1Q8TDF5 533 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 CPLX3Q8WVH0 158 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 RPL10LQ96L21 214 aaKnown RBP15.62■□□□□ 0.09
LIMS3-201ENST00000437679 MTG2Q9H4K7 406 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 MPP6Q9NZW5 540 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 SLCO3A1Q9UIG8 710 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 SLC25A13Q9UJS0 675 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 BZW2Q9Y6E2 419 aaKnown RBP15.62■□□□□ 0.09
LIMS3-201ENST00000437679 ITIH6Q6UXX5 1313 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 DOCK4Q8N1I0 1966 aa15.62■□□□□ 0.09
LIMS3-201ENST00000437679 DMXL1Q9Y485 3027 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 TTC34A8MYJ7 566 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 SIN3BO75182 1162 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 IGLV3-19P01714 112 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 OR1E1P30953 314 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 STK19P49842 368 aaPredicted RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 ZNF143P52747 638 aaPredicted RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 HDAC4P56524 1084 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 RPS14P62263 151 aaKnown RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 KRT83P78385 493 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 ZBED6P86452 979 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 TTC31Q49AM3 519 aaPredicted RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 RAB6CQ53S08 254 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 TDRD12Q587J7 1177 aaKnown RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 SYCP2LQ5T4T6 812 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 C6orf118Q5T5N4 469 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 TFAP2DQ7Z6R9 452 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 SETD3Q86TU7 594 aaPredicted RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 OR52K2Q8NGK3 314 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 SYN2Q92777 582 aaPredicted RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 FOXJ1Q92949 421 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 ALG14Q96F25 216 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 CNPY3Q9BT09 278 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 ZYG11BQ9C0D3 744 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 RAB6CQ9H0N0 254 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 OSBPL2Q9H1P3 480 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 RSPH9Q9H1X1 276 aaPredicted RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 PARVAQ9NVD7 372 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 WSB2Q9NYS7 404 aaPredicted RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 PPARGC1AQ9UBK2 798 aaKnown RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 OR12D3Q9UGF7 316 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 CAPN11Q9UMQ6 739 aa15.61■□□□□ 0.09
LIMS3-201ENST00000437679 LUC7L2Q9Y383 392 aaKnown RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 TNRC6BQ9UPQ9 1833 aaKnown RBP15.61■□□□□ 0.09
LIMS3-201ENST00000437679 DDX3XO00571 662 aaKnown RBP eCLIP15.6■□□□□ 0.09
LIMS3-201ENST00000437679 CCP110O43303 1012 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 CBFA2T2O43439 604 aa15.6■□□□□ 0.09
LIMS3-201ENST00000437679 RTN2O75298 545 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms