RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 FBXO38Q6PIJ6 1188 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF605Q86T29 641 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 BEND7Q8N7W2 519 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ERP27Q96DN0 273 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 NARS2Q96I59 477 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ZNF354BQ96LW1 612 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CKLFQ9UBR5 152 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CCDC85CA6NKD9 419 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 PDHXO00330 501 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 TMCC2O75069 709 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 KHDRBS3O75525 346 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CYP1A1P04798 512 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ADH1AP07327 375 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CHKAP35790 457 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 IL12RB1P42701 662 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CD151P48509 253 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 MFSD10Q14728 455 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 FSCN1Q16658 493 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ZSWIM7Q19AV6 140 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 SPANXN2Q5MJ10 180 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ALKBH2Q6NS38 261 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CYB5D1Q6P9G0 228 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CLEC17AQ6ZS10 378 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 PTAR1Q7Z6K3 402 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 LPCAT1Q8NF37 534 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 LRRC46Q96FV0 321 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CHAMP1Q96JM3 812 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CPNE1Q99829 537 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ZDHHC6Q9H6R6 413 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 MCM8Q9UJA3 840 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 MRPS23Q9Y3D9 190 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 HACD1B0YJ81 288 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 FGF10O15520 208 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 SNX4O95219 450 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 KCNH1O95259 989 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CAP2P40123 477 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 TUBP50607 506 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 MRPS35P82673 323 aaKnown RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 LAMTOR4Q0VGL1 99 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 CDH17Q12864 832 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 GRM3Q14832 879 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ZC2HC1CQ53FD0 456 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 COL26A1Q96A83 441 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 PXMP2Q9NR77 195 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 ABCC13Q9NSE7 274 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 TRPV2Q9Y5S1 764 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 PRDM15P57071 1507 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-204ENST00000423058 MYPNQ86TC9 1320 aa6.98□□□□□ -1.29
SCN1A-204ENST00000423058 C15orf38-AP3S2A0A0A6YYH1 394 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ALPPL2P10696 532 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CYP11B2P19099 503 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SCARA3Q6AZY7 606 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ARPINQ7Z6K5 226 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CPA6Q8N4T0 437 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 METTL21AQ8WXB1 218 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ATG4CQ96DT6 458 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 MAGEB18Q96M61 343 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 C3orf14Q9HBI5 128 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CYP4F12Q9HCS2 524 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 HCN3Q9P1Z3 774 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 BTBD7Q9P203 1132 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 PDP2Q9P2J9 529 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CATP04040 527 aaKnown RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 DPEP1P16444 411 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 HK2P52789 917 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 NRG3P56975 720 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 MYBPC1Q00872 1141 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ABRQ12979 859 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 METTL7BQ6UX53 244 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 JAMLQ86YT9 394 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SEC16BQ96JE7 1060 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 C9orf72Q96LT7 481 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 FRMD6Q96NE9 622 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SH2D3AQ9BRG2 576 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 TRIM51Q9BSJ1 452 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CAB39LQ9H9S4 337 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CPA4Q9UI42 421 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 PHF11Q9UIL8 331 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 RPS6KA6Q9UK32 745 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 IRAK3Q9Y616 596 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ALKQ9UM73 1620 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 RIC1Q4ADV7 1423 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 H3BM21 787 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ITGA2P17301 1181 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 BMP7P18075 431 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 ADIGQ0VDE8 80 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 TRIM28Q13263 835 aaKnown RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 E2F4Q16254 413 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 RSBN1Q5VWQ0 802 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SAMD7Q7Z3H4 446 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 FIBCD1Q8N539 461 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 HCAR2Q8TDS4 363 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 HEXDCQ8WVB3 486 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 C1QTNF1Q9BXJ1 281 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 SPATC1LQ9H0A9 340 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 RSPH9Q9H1X1 276 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-204ENST00000423058 RNPEPQ9H4A4 650 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 CYLDQ9NQC7 956 aa6.97□□□□□ -1.29
SCN1A-204ENST00000423058 MRPS17Q9Y2R5 130 aaKnown RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms