RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 MGAT5Q09328 741 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 HNRNPDQ14103 355 aaKnown RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 KCNJ11Q14654 390 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 RFTN1Q14699 578 aaPredicted RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 SETDB1Q15047 1291 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 TRADDQ15628 312 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 ATG16L1Q676U5 607 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CAPN12Q6ZSI9 719 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CYS1Q717R9 158 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 LMNTD2Q8IXW0 634 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 KIRREL3Q8IZU9 778 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 PPM1NQ8N819 430 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 FBF1Q8TES7 1133 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 IL37Q9NZH6 218 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CACNG4Q9UBN1 327 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 ZNF180Q9UJW8 692 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 LZTS1Q9Y250 596 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 RHOCP08134 193 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 AUHQ13825 339 aaKnown RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 ZSCAN26Q16670 478 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 ZNF783Q6ZMS7 281 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CCDC121Q6ZUS5 278 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CHST9Q7L1S5 443 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 RASSF3Q86WH2 238 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 SRRM1Q8IYB3 904 aaKnown RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 ANKRD42Q8N9B4 389 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CCDC63Q8NA47 563 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 SCAMP5Q8TAC9 235 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 NDRG1Q92597 394 aaKnown RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 FATE1Q969F0 183 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 CHMP6Q96FZ7 201 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 OLFM3Q96PB7 478 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 FAM167BQ9BTA0 163 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 WDR6Q9NNW5 1121 aaKnown RBP8.59□□□□□ -1.03
USP54-203ENST00000418501 TMLHEQ9NVH6 421 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 RBM22Q9NW64 420 aaKnown RBP eCLIP8.59□□□□□ -1.03
USP54-203ENST00000418501 SEPT3Q9UH03 358 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 YIPF1Q9Y548 306 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 NME7Q9Y5B8 376 aa8.59□□□□□ -1.03
USP54-203ENST00000418501 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.59□□□□□ -1.04
USP54-203ENST00000418501 NT5C1B-RDH14C9J2C7 533 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 ZNF197O14709 1029 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 TIMM44O43615 452 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 AP2A1O95782 977 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 GLUD1P00367 558 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 ETS1P14921 441 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 AFF1P51825 1210 aaKnown RBP8.59□□□□□ -1.04
USP54-203ENST00000418501 SLC18A1P54219 525 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 IFI35P80217 286 aaPredicted RBP8.59□□□□□ -1.04
USP54-203ENST00000418501 RAD51Q06609 339 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 POTEHQ6S545 545 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 TCEAL8Q8IYN2 117 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 ZDHHC14Q8IZN3 488 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 TTC17Q96AE7 1141 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 TLCD1Q96CP7 247 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 XPO6Q96QU8 1125 aaKnown RBP8.59□□□□□ -1.04
USP54-203ENST00000418501 RAD9AQ99638 391 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 USP29Q9HBJ7 922 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 TMEM248Q9NWD8 314 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 MARCH5Q9NX47 278 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.59□□□□□ -1.04
USP54-203ENST00000418501 SFMBT1Q9UHJ3 866 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 VANGL2Q9ULK5 521 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 VPS9D1Q9Y2B5 631 aa8.59□□□□□ -1.04
USP54-203ENST00000418501 SLC9A3R1O14745 358 aaPredicted RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 TNFRSF10BO14763 440 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 SUN1O94901 812 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 RB1P06400 928 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 HMBSP08397 361 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 EZRP15311 586 aaKnown RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 OR1E1P30953 314 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 POLD2P49005 469 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 IL10RBQ08334 325 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 TAF1BQ53T94 588 aaPredicted RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 TTMPQ5BVD1 217 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 TRNP1Q6NT89 227 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 GPRIN1Q7Z2K8 1008 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 HOMEZQ8IX15 550 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 LGI2Q8N0V4 545 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 AFAP1L2Q8N4X5 818 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 ACMSDQ8TDX5 336 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 EPS8L3Q8TE67 593 aaKnown RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 SCG3Q8WXD2 468 aaKnown RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 CASP10Q92851 521 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 VPS39Q96JC1 886 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 PAFAH2Q99487 392 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 CINPQ9BW66 212 aaPredicted RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 TRPC7Q9HCX4 862 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 ASAH2Q9NR71 780 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 TBK1Q9UHD2 729 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 TLK1Q9UKI8 766 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 TLL1O43897 1013 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 CXCL14O95715 111 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 ITGB1P05556 798 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 TACR2P21452 398 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 PAPOLAP51003 745 aaKnown RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 SESN2P58004 480 aaPredicted RBP8.58□□□□□ -1.04
USP54-203ENST00000418501 GRTP1Q5TC63 336 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 IL31Q6EBC2 164 aa8.58□□□□□ -1.04
USP54-203ENST00000418501 PRSS55Q6UWB4 352 aaPredicted RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms