RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PIH1D2Q8WWB5 315 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 ZCCHC2Q9C0B9 1178 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 COMMD3-BMI1R4GMX3 469 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 TOP3BO95985 862 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 ME2P23368 584 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 RHEBQ15382 184 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 OGFRL1Q5TC84 451 aaPredicted RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 HPF1Q9NWY4 346 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 SSU72P8A0A1W2PR75 194 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 PPM1BO75688 479 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 COMTP21964 271 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 GRK5P34947 590 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 DCP1BQ8IZD4 617 aaKnown RBP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 GMCL1Q96IK5 515 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 AIFM3Q96NN9 605 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 LRRC40Q9H9A6 602 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 TRIM38O00635 465 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 ABRQ12979 859 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 RFX4Q33E94 735 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 GRHL2Q6ISB3 625 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 PLET1Q6UQ28 207 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 PCDH19Q8TAB3 1148 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 FAM136AQ96C01 138 aa13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.56□□□□□ -0.24
CCDC88A-204ENST00000413716 HUNKP57058 714 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 AFTPHQ6ULP2 937 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 MAFIPQ8WZ33 124 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 COG5Q9UP83 839 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 GMPPBQ9Y5P6 360 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 CLASP1Q7Z460 1538 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 SERPINF2P08697 491 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 USP46P62068 366 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 MGAT5BQ3V5L5 792 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 FBXO36Q8NEA4 188 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 GATAD2BQ8WXI9 593 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 GP5P40197 560 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 ZNF234Q14588 700 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 CMTR2Q8IYT2 770 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 SLC26A4O43511 780 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 NOL4O94818 638 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 ECHS1P30084 290 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 OR2L3Q8NG85 312 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 PCDH12Q9NPG4 1184 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 OGDHLQ9ULD0 1010 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 SIN3BO75182 1162 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 MSL3P1P0C860 447 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 PTPN3P26045 913 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 MAPK7Q13164 816 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 TCEA2Q15560 299 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 MEA1Q16626 185 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 TMIEQ8NEW7 156 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 MCOLN3Q8TDD5 553 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 GIPC3Q8TF64 312 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 IPCEF1Q8WWN9 437 aaPredicted RBP13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 DYNLL2Q96FJ2 89 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 KLHL5Q96PQ7 755 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 PEG3Q9GZU2 1588 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 UGT2B15P54855 530 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 POP5Q969H6 163 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 TTLL13PA6NNM8 815 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 UBOX5O94941 541 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 PDK2Q15119 407 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 CYP2R1Q6VVX0 501 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 AP4E1Q9UPM8 1137 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 TDRKHQ9Y2W6 561 aaKnown RBP13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 CRATP43155 626 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 PPM1LQ5SGD2 360 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 AMIGO1Q86WK6 493 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 ARMC10Q8N2F6 343 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 BORCS5Q969J3 196 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 TNKS2Q9H2K2 1166 aa13.55□□□□□ -0.24
CCDC88A-204ENST00000413716 MAGEB16A2A368 324 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 PIK3CGP48736 1102 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 RAPSNQ13702 412 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 C2orf69Q8N8R5 385 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 MAGEC3Q8TD91 643 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 PAFAH2Q99487 392 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 POLD4Q9HCU8 107 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 GPR108Q9NPR9 543 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 KIAA1257Q9ULG3 409 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 KDM4BO94953 1096 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 CPA3P15088 417 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 CRABP2P29373 138 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 HOXC8P31273 242 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 DEFA5Q01523 94 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 ANO7Q6IWH7 933 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 OR56A4Q8NGH8 313 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 ZNF471Q9BX82 626 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 KCNN2Q9H2S1 579 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 ACOT9Q9Y305 439 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 PCDHB2Q9Y5E7 798 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 CHST10O43529 356 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 MTA2O94776 668 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 CCNB2O95067 398 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 C9P02748 559 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 PRR29P0C7W0 189 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 BGNP21810 368 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 NR1H2P55055 460 aa13.54□□□□□ -0.24
CCDC88A-204ENST00000413716 SRFBP1Q8NEF9 429 aaKnown RBP13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms