RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ACADSBP45954 432 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 HSF5Q4G112 596 aaPredicted RBP13.7□□□□□ -0.22
VPS54-203ENST00000409558 ATG14Q6ZNE5 492 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 C4orf50Q6ZRC1 276 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 CHST12Q9NRB3 414 aa13.7□□□□□ -0.22
VPS54-203ENST00000409558 HBS1LQ9Y450 684 aaKnown RBP13.7□□□□□ -0.22
VPS54-203ENST00000409558 FYNP06241 537 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 ZCCHC18P0CG32 403 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 RALBP11234 206 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 GPR15P49685 360 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 DDR2Q16832 855 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 WLSQ5T9L3 541 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 SNX30Q5VWJ9 437 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 SPRYD7Q5W111 196 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 RGS9BPQ6ZS82 235 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 ARNTL2Q8WYA1 636 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 BHMTQ93088 406 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 NAF1Q96HR8 494 aaKnown RBP13.69□□□□□ -0.22
VPS54-203ENST00000409558 COLEC11Q9BWP8 271 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 TBX18O95935 607 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 MAP2K5Q13163 448 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 CTC1Q2NKJ3 1217 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 OTUD1Q5VV17 481 aaPredicted RBP13.69□□□□□ -0.22
VPS54-203ENST00000409558 GDF6Q6KF10 455 aaPredicted RBP13.69□□□□□ -0.22
VPS54-203ENST00000409558 CIR1Q86X95 450 aaPredicted RBP13.69□□□□□ -0.22
VPS54-203ENST00000409558 CRYBG2Q8N1P7 616 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 ZMIZ2Q8NF64 920 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 UCMAQ8WVF2 138 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 PHACTR1Q9C0D0 580 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 WWP1Q9H0M0 922 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 SLC2A6Q9UGQ3 507 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 NEMP2A6NFY4 417 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 ENO4A6NNW6 628 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 SPAG6O75602 509 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 ATP5HO75947 161 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 EPHA3P29320 983 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 MPP1Q00013 466 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 FSTL4Q6MZW2 842 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 BZW1Q7L1Q6 419 aaKnown RBP13.69□□□□□ -0.22
VPS54-203ENST00000409558 TAC4Q86UU9 113 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 HSFY1Q96LI6 401 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 ZIC5Q96T25 663 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 NUF2Q9BZD4 464 aa13.69□□□□□ -0.22
VPS54-203ENST00000409558 SMIM35A0A1B0GVV1 85 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 TBX10O75333 385 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 ELNP15502 786 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 TMEM198Q66K66 360 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 ARHGAP17Q68EM7 881 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 SLC41A1Q8IVJ1 513 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 PHTF2Q8N3S3 785 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 TTC39CQ8N584 583 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 ZNF781Q8N8C0 355 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 ADAM2Q99965 735 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 CYLDQ9NQC7 956 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 DPYSL4O14531 572 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 CIB2O75838 187 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 CPA3P15088 417 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 PRKCHP24723 683 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 ARRB2P32121 409 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.68□□□□□ -0.22
VPS54-203ENST00000409558 KCTD4Q8WVF5 259 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 USP13Q92995 863 aaPredicted RBP13.68□□□□□ -0.22
VPS54-203ENST00000409558 FICDQ9BVA6 458 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 IQCA1LA6NCM1 817 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 FAM159BA6NKW6 160 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 SEMA5AQ13591 1074 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 FAM110CQ1W6H9 321 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 ARL13BQ3SXY8 428 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 KCNMB4Q86W47 210 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 NAT14Q8WUY8 206 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 TLK1Q9UKI8 766 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 TMEM233B4DJY2 109 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 NT5C1B-RDH14C9J2C7 533 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 TSPAN3O60637 253 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 PRKCGP05129 697 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 GRK4P32298 578 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 NAGLUP54802 743 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 DAOAP59103 153 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 SH2D5Q6ZV89 423 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 IFNLR1Q8IU57 520 aaPredicted RBP13.68□□□□□ -0.22
VPS54-203ENST00000409558 MTBPQ96DY7 904 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 FSD1LQ9BXM9 530 aa13.68□□□□□ -0.22
VPS54-203ENST00000409558 TRMT13Q9NUP7 481 aaKnown RBP13.68□□□□□ -0.22
VPS54-203ENST00000409558 C1QAP02745 245 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 NR2C2P49116 596 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 CPT1AP50416 773 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 MPP3Q13368 585 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 CNGA3Q16281 694 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 PTAR1Q7Z6K3 402 aaPredicted RBP13.67□□□□□ -0.22
VPS54-203ENST00000409558 LRRTM3Q86VH5 581 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 OR6P1Q8NGX9 317 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 SCG3Q8WXD2 468 aaKnown RBP13.67□□□□□ -0.22
VPS54-203ENST00000409558 DNAJC9Q8WXX5 260 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 HNRNPABQ99729 332 aaKnown RBP13.67□□□□□ -0.22
VPS54-203ENST00000409558 BRD8Q9H0E9 1235 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 EMCNQ9ULC0 261 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 ANKRD12Q6UB98 2062 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 PGAM1P18669 254 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 MPSTP25325 297 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 BTBD8Q5XKL5 378 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms