RNA–Protein interactions for RNA: ENST00000400540.5

LINC00544-201, long intergenic non-protein coding RNA 544, humanhuman

TSL 5 BASIC

Gene LINC00544, Length 1,031 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00544-201ENST00000400540 FMR1NBQ8N0W7 255 aaPredicted RBP12.32□□□□□ -0.44
LINC00544-201ENST00000400540 KDM1BQ8NB78 822 aa12.32□□□□□ -0.44
LINC00544-201ENST00000400540 DDX50Q9BQ39 737 aaKnown RBP12.32□□□□□ -0.44
LINC00544-201ENST00000400540 GDF3Q9NR23 364 aa12.32□□□□□ -0.44
LINC00544-201ENST00000400540 ST7Q9NRC1 585 aa12.32□□□□□ -0.44
LINC00544-201ENST00000400540 CYTH4Q9UIA0 394 aa12.32□□□□□ -0.44
LINC00544-201ENST00000400540 PCDHGA1Q9Y5H4 931 aa12.32□□□□□ -0.44
LINC00544-201ENST00000400540 DOCK4Q8N1I0 1966 aa12.32□□□□□ -0.44
LINC00544-201ENST00000400540 KNTC1P50748 2209 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 PTPRQQ9UMZ3 2332 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 EIF4E1BA6NMX2 242 aaKnown RBP12.31□□□□□ -0.44
LINC00544-201ENST00000400540 E9PAM4 449 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 TLR4O00206 839 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 MOCS3O95396 460 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 ADH1BP00325 375 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 JUPP14923 745 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 CD44P16070 742 aaKnown RBP12.31□□□□□ -0.44
LINC00544-201ENST00000400540 PDGFRAP16234 1089 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 GOT1P17174 413 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 C5AR1P21730 350 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 MAT2AP31153 395 aaKnown RBP12.31□□□□□ -0.44
LINC00544-201ENST00000400540 HNF1BP35680 557 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 GPD2P43304 727 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 RPL34P49207 117 aaKnown RBP12.31□□□□□ -0.44
LINC00544-201ENST00000400540 LRRC63Q05C16 580 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 NNTQ13423 1086 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 STILQ15468 1287 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 C6orf118Q5T5N4 469 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 RNF219Q5W0B1 726 aaPredicted RBP12.31□□□□□ -0.44
LINC00544-201ENST00000400540 ISM2Q6H9L7 571 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 FBXL19Q6PCT2 694 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.31□□□□□ -0.44
LINC00544-201ENST00000400540 KANSL1Q7Z3B3 1105 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 CCDC117Q8IWD4 279 aaPredicted RBP12.31□□□□□ -0.44
LINC00544-201ENST00000400540 TSC1Q92574 1164 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 SKA1Q96BD8 255 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 KREMEN1Q96MU8 473 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 CAAP1Q9H8G2 361 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 ARHGAP20Q9P2F6 1191 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 TJP2Q9UDY2 1190 aa12.31□□□□□ -0.44
LINC00544-201ENST00000400540 ASH1LQ9NR48 2969 aaKnown RBP12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3DA0A087WVF3 549 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3IA0A087WXS9 549 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3EA0A087X179 549 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3KA0A087X1G2 549 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3FA6NER0 549 aaPredicted RBP12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3LB9A6J9 549 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 E5RJQ4 531 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 LATO43561 262 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 SDC3O75056 442 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 RTN2O75298 545 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 C1QL1O75973 258 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 IGLV3-25P01717 112 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 APOEP02649 317 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3HP0C7X1 549 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 EIF2S3P41091 472 aaKnown RBP12.3□□□□□ -0.44
LINC00544-201ENST00000400540 ARRB1P49407 418 aaPredicted RBP12.3□□□□□ -0.44
LINC00544-201ENST00000400540 IRAK1P51617 712 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 SFSWAPQ12872 951 aaKnown RBP12.3□□□□□ -0.44
LINC00544-201ENST00000400540 ELAVL3Q14576 367 aaKnown RBP12.3□□□□□ -0.44
LINC00544-201ENST00000400540 POM121L1PQ3SYA9 428 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 CCDC40Q4G0X9 1142 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 SFMBT2Q5VUG0 894 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3GQ6DHY5 549 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3CQ6IPX1 549 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 TBC1D3Q8IZP1 549 aaPredicted RBP12.3□□□□□ -0.44
LINC00544-201ENST00000400540 SPATA20Q8TB22 786 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 FRS2Q8WU20 508 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 GSDMAQ96QA5 445 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 ACP6Q9NPH0 428 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 SARDHQ9UL12 918 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 CA5BQ9Y2D0 317 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 RAI2Q9Y5P3 530 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 AK5Q9Y6K8 562 aa12.3□□□□□ -0.44
LINC00544-201ENST00000400540 ASXL3Q9C0F0 2248 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 SYNJ2BP-COX16A0A087WUM0 186 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 F5H5T6 163 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 CAPN9O14815 690 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 PMM2O15305 246 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 YKT6O15498 198 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 TRUB2O95900 331 aaKnown RBP12.29□□□□□ -0.44
LINC00544-201ENST00000400540 GGCXP38435 758 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 CENPCQ03188 943 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 TAF5Q15542 800 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 NAPEPLDQ6IQ20 393 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 CXorf57Q6NSI4 855 aaKnown RBP12.29□□□□□ -0.44
LINC00544-201ENST00000400540 CCAR2Q8N163 923 aaKnown RBP12.29□□□□□ -0.44
LINC00544-201ENST00000400540 OR52K2Q8NGK3 314 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 SMARCE1Q969G3 411 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 FAM131CQ96AQ9 280 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 CCDC34Q96HJ3 373 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 BTN2A3PQ96KV6 586 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 UBL7Q96S82 380 aaPredicted RBP12.29□□□□□ -0.44
LINC00544-201ENST00000400540 PRMT1Q99873 361 aaKnown RBP12.29□□□□□ -0.44
LINC00544-201ENST00000400540 PRORYQ9H606 182 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 METTL14Q9HCE5 456 aaKnown RBP12.29□□□□□ -0.44
LINC00544-201ENST00000400540 COX16Q9P0S2 106 aa12.29□□□□□ -0.44
LINC00544-201ENST00000400540 KCNU1A8MYU2 1149 aa12.28□□□□□ -0.44
LINC00544-201ENST00000400540 PLRG1O43660 514 aaKnown RBP12.28□□□□□ -0.44
LINC00544-201ENST00000400540 C1SP09871 688 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms