RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 HLA-FP30511 346 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 NSUN2Q08J23 767 aaKnown RBP eCLIP7.21□□□□□ -1.26
LIMA1-202ENST00000394943 ZSCAN30Q86W11 494 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 CPNE8Q86YQ8 564 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 WFDC5Q8TCV5 224 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 BTBD6Q96KE9 485 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 EPAS1Q99814 870 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 APOL5Q9BWW9 433 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 ARHGEF3Q9NR81 526 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 EBF1Q9UH73 591 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 TMCO5BA8MYB1 307 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 PRAMEF11O60813 436 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 PALMO75781 387 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 PPIDQ08752 370 aaKnown RBP7.21□□□□□ -1.26
LIMA1-202ENST00000394943 CAMK2GQ13555 558 aaPredicted RBP7.21□□□□□ -1.26
LIMA1-202ENST00000394943 LRRC32Q14392 662 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 ALFQ53S48 1182 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 TFDP3Q5H9I0 405 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 C6orf118Q5T5N4 469 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 SPOCD1Q6ZMY3 1216 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 RSRC2Q7L4I2 434 aaKnown RBP7.21□□□□□ -1.26
LIMA1-202ENST00000394943 FAM131BQ86XD5 332 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 USP33Q8TEY7 942 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 ALG3Q92685 438 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 IL12RB2Q99665 862 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 FEM1AQ9BSK4 669 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 TRIM10Q9UDY6 481 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 GGA2Q9UJY4 613 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 CLEC4EQ9ULY5 219 aa7.21□□□□□ -1.26
LIMA1-202ENST00000394943 PRR33A8MZF0 331 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 LILRB5O75023 590 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 TULP3O75386 442 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 CCNCP24863 283 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 GALK1P51570 392 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 IL10RBQ08334 325 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 LMAN2Q12907 356 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 ZNF852Q6ZMS4 543 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 RAPGEF5Q92565 580 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 ANP32BQ92688 251 aaKnown RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 PBKQ96KB5 322 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 P2RY13Q9BPV8 354 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 DESI2Q9BSY9 194 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 RNF14Q9UBS8 474 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 BCLAF3A2AJT9 711 aaKnown RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 MAFKO60675 156 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 CYBBP04839 570 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 MAGEA6P43360 314 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 PLEKHG6Q3KR16 790 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 IER5LQ5T953 404 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 RAP1GAP2Q684P5 730 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 GRAMD4Q6IC98 578 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 TXNDC11Q6PKC3 985 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 SYT13Q7L8C5 426 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 MIB1Q86YT6 1006 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 NPWQ8N729 165 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 SLC35B2Q8TB61 432 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 ADAM32Q8TC27 787 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 NKD2Q969F2 451 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 TMA16Q96EY4 203 aaKnown RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 CPEB1Q9BZB8 566 aaKnown RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 TMPRSS4Q9NRS4 437 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 FBXO4Q9UKT5 387 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 ANKRD36A6QL64 1941 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 APOC4-APOC2K7ER74 178 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 CNTN5O94779 1100 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 IPO7O95373 1038 aaKnown RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 MOCS3O95396 460 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 APOC2P02655 101 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 HSPA9P38646 679 aaKnown RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 ARF5P84085 180 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 TUBB2AQ13885 445 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 GRM2Q14416 872 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 AGERQ15109 404 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 NOMO1Q15155 1222 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 FSCBQ5H9T9 825 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 PITRM1Q5JRX3 1037 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 PEAR1Q5VY43 1037 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 LRRC31Q6UY01 552 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 TRMT11Q7Z4G4 463 aaKnown RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 MAP7D3Q8IWC1 876 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 MAML2Q8IZL2 1156 aaPredicted RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 LGI2Q8N0V4 545 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 PYROXD2Q8N2H3 581 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 KRT35Q92764 455 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 RPGRIP1Q96KN7 1286 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 QKIQ96PU8 341 aaKnown RBP eCLIP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 TUBB2BQ9BVA1 445 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 ZWILCHQ9H900 591 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 SEPT11Q9NVA2 429 aaKnown RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 NUDT5Q9UKK9 219 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 AMFRQ9UKV5 643 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 TFR2Q9UP52 801 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 DRG1Q9Y295 367 aaKnown RBP7.2□□□□□ -1.26
LIMA1-202ENST00000394943 PIAS3Q9Y6X2 628 aa7.2□□□□□ -1.26
LIMA1-202ENST00000394943 TMEM221A6NGB7 291 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 M0R296 226 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 ZNF500O60304 480 aaPredicted RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 PABPC1P11940 636 aaKnown RBP7.19□□□□□ -1.26
LIMA1-202ENST00000394943 CES1P23141 567 aa7.19□□□□□ -1.26
LIMA1-202ENST00000394943 SUOXP51687 545 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms