RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 LRTOMTQ8WZ04 291 aa14.98□□□□□ -0.01
VPS9D1-201ENST00000389386 ATG4CQ96DT6 458 aa14.98□□□□□ -0.01
VPS9D1-201ENST00000389386 OR52B2Q96RD2 323 aa14.98□□□□□ -0.01
VPS9D1-201ENST00000389386 FRMD8Q9BZ67 464 aaPredicted RBP14.98□□□□□ -0.01
VPS9D1-201ENST00000389386 EHMT1Q9H9B1 1298 aa14.98□□□□□ -0.01
VPS9D1-201ENST00000389386 RIC8BQ9NVN3 520 aa14.98□□□□□ -0.01
VPS9D1-201ENST00000389386 DUS2Q9NX74 493 aaKnown RBP14.98□□□□□ -0.01
VPS9D1-201ENST00000389386 RBMX2Q9Y388 322 aaKnown RBP14.98□□□□□ -0.01
VPS9D1-201ENST00000389386 PCDHB4Q9Y5E5 795 aa14.98□□□□□ -0.01
VPS9D1-201ENST00000389386 TESPA1A2RU30 521 aaPredicted RBP14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 TRIM64A6NGJ6 449 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 PFDN6O15212 129 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 CSPG5O95196 566 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 PRKCGP05129 697 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 GSSP48637 474 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 PMS2P3Q13401 168 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 TKFCQ3LXA3 575 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 KCNT1Q5JUK3 1230 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 WDR78Q5VTH9 848 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 USP37Q86T82 979 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 MAPK15Q8TD08 544 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 RCN3Q96D15 328 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 CNDP1Q96KN2 507 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 IPO11Q9UI26 975 aaKnown RBP14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 CTDP1Q9Y5B0 961 aaPredicted RBP14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 DICER1Q9UPY3 1922 aaKnown RBP14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 SLC15A5A6NIM6 579 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 FAM47E-STBD1D6RA91 191 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 APOC4-APOC2K7ER74 178 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 PEX10O60683 326 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 APOC2P02655 101 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 OSBPP22059 807 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 JAK1P23458 1154 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 IL1R2P27930 398 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 HOXD11P31277 338 aaPredicted RBP14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 SLC25A11Q02978 314 aaKnown RBP14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 TRPC3Q13507 836 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 TRIM16LQ309B1 348 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 WDR44Q5JSH3 913 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 FAXCQ5TGI0 409 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 TMEM26Q6ZUK4 368 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 THNSL1Q8IYQ7 743 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 RP9Q8TA86 221 aaKnown RBP14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 PTCD2Q8WV60 388 aaKnown RBP14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 CLIP3Q96DZ5 547 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 CCDC138Q96M89 665 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 ZMAT2Q96NC0 199 aaKnown RBP14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 WDR41Q9HAD4 459 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 RAB6BQ9NRW1 208 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 SLC9A2Q9UBY0 812 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 TBX20Q9UMR3 447 aa14.97□□□□□ -0.01
VPS9D1-201ENST00000389386 DHX15O43143 795 aaKnown RBP14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 SNAP91O60641 907 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 GLRA3O75311 464 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 DGKIO75912 1065 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 RALBP11234 206 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 ENO3P13929 434 aaPredicted RBP14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 FGFR3P22607 806 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 TKTP29401 623 aaKnown RBP14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 TTKP33981 857 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 MTMR1Q13613 665 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 ARFGAP1Q8N6T3 406 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 TERB1Q8NA31 727 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 SPATA18Q8TC71 538 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 TFAP2CQ92754 450 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 ACDQ96AP0 544 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 ACO2Q99798 780 aaKnown RBP14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 CTRCQ99895 268 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 NAA50Q9GZZ1 169 aaKnown RBP14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 CDH19Q9H159 772 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 RNPEPQ9H4A4 650 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 SPO11Q9Y5K1 396 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 KPNA4O00629 521 aaPredicted RBP14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 CALB1P05937 261 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 PTPN2P17706 415 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 RCVRNP35243 200 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 RARRES1P49788 294 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 SOX10P56693 466 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 NLRP11P59045 1033 aaKnown RBP14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 GNA12Q03113 381 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 OXA1LQ15070 435 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 DARS2Q6PI48 645 aaKnown RBP14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 IFNLR1Q8IU57 520 aaPredicted RBP14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 ZNF786Q8N393 782 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 ACMSDQ8TDX5 336 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 SLC38A10Q9HBR0 1119 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 VTA1Q9NP79 307 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 SACM1LQ9NTJ5 587 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 CDY2AQ9Y6F7 541 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 CDY1Q9Y6F8 540 aa14.96□□□□□ -0.01
VPS9D1-201ENST00000389386 KDM1AO60341 852 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 HLA-DRAP01903 254 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 ALDOAP04075 364 aaKnown RBP14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 EIF2S1P05198 315 aaKnown RBP14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 IREB2P48200 963 aaKnown RBP14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 PSMC1P62191 440 aaKnown RBP14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 PRAMEP78395 509 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 ROR1Q01973 937 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 ZBTB17Q13105 803 aa14.95□□□□□ -0.02
VPS9D1-201ENST00000389386 RAB39AQ14964 217 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms