RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 TYMPP19971 482 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 FUT6P51993 359 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 MGAT2Q10469 447 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 TCF15Q12870 199 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 CCDC93Q567U6 631 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 TRIM61Q5EBN2 209 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 EEF1AKMT2Q5JPI9 291 aaKnown RBP-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 LDLRAD1Q5T700 205 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 CACHD1Q5VU97 1274 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 LIPMQ5VYY2 423 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 GPRIN3Q6ZVF9 776 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 CAMK1DQ8IU85 385 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 APLFQ8IW19 511 aaPredicted RBP-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 PGBD5Q8N414 524 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 KLHL30-AS1Q8NEE0 82 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 NGDNQ8NEJ9 315 aaKnown RBP-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 TMX3Q96JJ7 454 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 C17orf80Q9BSJ5 609 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 TTLL2Q9BWV7 592 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 LRRC4Q9HBW1 653 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 ABCF3Q9NUQ8 709 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 CTSZQ9UBR2 303 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 PRKAG3Q9UGI9 489 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 MRPS17Q9Y2R5 130 aaKnown RBP-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 SNX14Q9Y5W7 946 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 ACACBO00763 2458 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 SPATA31A1Q5TZJ5 1347 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 FAM205AQ6ZU69 1335 aa-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 DMBT1Q9UGM3 2413 aaPredicted RBP-0.4□□□□□ -2.47
RNU6-540P-201ENST00000384622 HELZ2Q9BYK8 2649 aaKnown RBP-0.41□□□□□ -2.47
RNU6-540P-201ENST00000384622 A0A1W2PP11 408 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 CFAP69A5D8W1 941 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 EPM2AB3EWF7 344 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 HAT1O14929 419 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 DCLK1O15075 740 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 RAB11FIP3O75154 756 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 PMS2P2O95744 297 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 CD5P06127 495 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 GNAI3P08754 354 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 PRSS56P0CW18 603 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 ATP2A2P16615 1042 aaKnown RBP-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 CHRNB2P17787 502 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 PDCP20941 246 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 NKX2-1P43699 371 aaPredicted RBP-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 SOX2P48431 317 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 FMO5P49326 533 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 GNAI1P63096 354 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 EGFEM1PQ0D2K5 195 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 DHX34Q14147 1143 aaKnown RBP-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 GBX1Q14549 363 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 IQCB1Q15051 598 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 DUSP6Q16828 381 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 LONRF3Q496Y0 759 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 PRR30Q53SZ7 412 aaPredicted RBP-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 SFMBT2Q5VUG0 894 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 RSBN1Q5VWQ0 802 aaPredicted RBP-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 LRIG3Q6UXM1 1119 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 FRRS1Q6ZNA5 592 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 NEK10Q6ZWH5 1172 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 USP37Q86T82 979 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 SFR1Q86XK3 245 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 RHOT1Q8IXI2 618 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 FAM71DQ8N9W8 422 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 PCSK9Q8NBP7 692 aaKnown RBP-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 NEXN-AS1Q8NBZ9 246 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 DDHD1Q8NEL9 900 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 SLC24A4Q8NFF2 622 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 TSPEARQ8WU66 669 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 RAX2Q96IS3 184 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 TXNDC15Q96J42 360 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 ACE2Q9BYF1 805 aaPredicted RBP-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 PARLQ9H300 379 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 CLK4Q9HAZ1 481 aaKnown RBP-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 GPR35Q9HC97 309 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 INTS10Q9NVR2 710 aaKnown RBP-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 FAM118AQ9NWS6 357 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 CFAP97Q9P2B7 532 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 PHTF1Q9UMS5 762 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 PLAAQ9Y263 795 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 VSIG4Q9Y279 399 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 TNKSO95271 1327 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 MGAM2Q2M2H8 2515 aa-0.41□□□□□ -2.48
RNU6-540P-201ENST00000384622 GREB1LQ9C091 1923 aaPredicted RBP-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 A0A0U1RQJ8 604 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 SMIM1B2RUZ4 78 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 M0QYG6 137 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 TGM5O43548 720 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 MARCH6O60337 910 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 CCNT1O60563 726 aaKnown RBP-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 TRIM49P0CI25 452 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 TRIM49CP0CI26 452 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 PAX1P15863 534 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 MCM3P25205 808 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 ZNF84P51523 738 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 WDR5P61964 334 aaKnown RBP-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 GPC5P78333 572 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 FANCCQ00597 558 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 GRAPQ13588 217 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 MPEG1Q2M385 716 aa-0.42□□□□□ -2.48
RNU6-540P-201ENST00000384622 TPRNQ4KMQ1 711 aa-0.42□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms