RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 RBBP5Q15291 538 aaKnown RBP16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 CNPY1Q3B7I2 92 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 ANKRD23Q86SG2 305 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 NME8Q8N427 588 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 MAPK15Q8TD08 544 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 GDPD5Q8WTR4 605 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 CAB39LQ9H9S4 337 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 COPG2Q9UBF2 871 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 MORF4L1Q9UBU8 362 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 KIAA1257Q9ULG3 409 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 POMPQ9Y244 141 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 NRCAMQ92823 1304 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 BEST1O76090 585 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 TMEM110Q86TL2 294 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 PIGZQ86VD9 579 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 ZNF781Q8N8C0 355 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 APBB2Q92870 758 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 A0A0G2JMZ2 1700 aa16.65■□□□□ 0.26
NKX3-1-201ENST00000380871 RNF103O00237 685 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 FKBP6O75344 327 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 ALDH1A2O94788 518 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 RAG1P15918 1043 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 CALRP27797 417 aaKnown RBP16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 TYK2P29597 1187 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 MSX2P35548 267 aaPredicted RBP16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 SULT1E1P49888 294 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 IRF9Q00978 393 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 CDK18Q07002 472 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 FAM110CQ1W6H9 321 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 SLC9B1Q4ZJI4 515 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 STEAP4Q687X5 459 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 OSTM1Q86WC4 334 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 HASPINQ8TF76 798 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 G3BP2Q9UN86 482 aaKnown RBP16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 IPPQ9Y573 584 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 GOLGA8QA0A0J9YX86 632 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 GOLGA8OA6NCC3 632 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 GOLGA8NF8WBI6 632 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 CCNT2O60583 730 aaKnown RBP16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 OPHN1O60890 802 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 RALBP11234 206 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 CCR10P46092 362 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 MAP3K7CLP57077 242 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 TRIP10Q15642 601 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 GTF3C2Q8WUA4 911 aaPredicted RBP16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 KBTBD7Q8WVZ9 684 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 PPP2R3CQ969Q6 453 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 FCRL3Q96P31 734 aaPredicted RBP16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 AGAP3Q96P47 875 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 AGAP2Q99490 1192 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 A0A0A0MRY4 1105 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 TXNDC9O14530 226 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 PGK1P00558 417 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 TAF6P49848 677 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 ZNF157P51786 506 aaPredicted RBP16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 TBL3Q12788 808 aaKnown RBP16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 PGM2L1Q6PCE3 622 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 FBXL19Q6PCT2 694 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 ACVR1CQ8NER5 493 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 PPP4R1Q8TF05 950 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 EMID1Q96A84 441 aaPredicted RBP16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 SPATA13Q96N96 652 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 LRRC4Q9HBW1 653 aa16.64■□□□□ 0.25
NKX3-1-201ENST00000380871 SF3B1O75533 1304 aaKnown RBP eCLIP16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 CDK7P50613 346 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 ABCE1P61221 599 aaKnown RBP16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 BST2Q10589 180 aaKnown RBP16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 CXCL17Q6UXB2 119 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 P2RY11Q96G91 374 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 GAD1Q99259 594 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 COG4Q9H9E3 785 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 PCDHGB4Q9UN71 923 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 PCDHGB5Q9Y5G0 923 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 MYADML2A6NDP7 307 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 KCNK1O00180 336 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 KLHL2O95198 593 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 SPATA31D3P0C874 917 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 GNASQ5JWF2 1037 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 PPM1LQ5SGD2 360 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 SPATA31D4Q6ZUB0 917 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 ACTRT2Q8TDY3 377 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 C11orf84Q9BUA3 381 aaPredicted RBP16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 SPATA16Q9BXB7 569 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 SNX15Q9NRS6 342 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 DNAJB4Q9UDY4 337 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 USP3Q9Y6I4 520 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 RPS6KL1Q9Y6S9 549 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 CITO14578 2027 aa16.63■□□□□ 0.25
NKX3-1-201ENST00000380871 OR6B1O95007 311 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 F2P00734 622 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 ATXN3P54252 364 aaPredicted RBP16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 MAP2K5Q13163 448 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 LIN52Q52LA3 116 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 HFE2Q6ZVN8 426 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 DCLK2Q8N568 766 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 ANKRD52Q8NB46 1076 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 ATP2A3Q93084 1043 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 OLFM3Q96PB7 478 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 OR52B2Q96RD2 323 aa16.62■□□□□ 0.25
NKX3-1-201ENST00000380871 PLEKHA5Q9HAU0 1116 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms