RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 GRTP1Q5TC63 336 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 EXOC3L1Q86VI1 746 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 DENND1CQ8IV53 801 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 TRIB2Q92519 343 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 SDCCAG3Q96C92 435 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 GSTA4O15217 222 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 MFSD11O43934 449 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 KLHL2O95198 593 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 LMNAP02545 664 aaKnown RBP14.81□□□□□ -0.04
TCOF1-202ENST00000377797 PRMT2P55345 433 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 ITIH4Q14624 930 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 VARS2Q5ST30 1063 aaKnown RBP14.81□□□□□ -0.04
TCOF1-202ENST00000377797 FUT10Q6P4F1 479 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 C15orf39Q6ZRI6 1047 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 PARP9Q8IXQ6 854 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 ZMAT2Q96NC0 199 aaKnown RBP14.81□□□□□ -0.04
TCOF1-202ENST00000377797 LRRC4CQ9HCJ2 640 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 L3MBTL1Q9Y468 752 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 HCRTO43612 131 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 WNT7BP56706 349 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 AARS2Q5JTZ9 985 aaKnown RBP14.81□□□□□ -0.04
TCOF1-202ENST00000377797 PPM1LQ5SGD2 360 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 AGGF1Q8N302 714 aaeCLIP14.81□□□□□ -0.048e-7■□□□□ 10.4
TCOF1-202ENST00000377797 CPT1BQ92523 772 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 CPNE1Q99829 537 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 APOL5Q9BWW9 433 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 HAPLN2Q9GZV7 340 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 ARHGEF4Q9NR80 690 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 GMIPQ9P107 970 aa14.81□□□□□ -0.04
TCOF1-202ENST00000377797 VPS26AO75436 327 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 IL1R2P27930 398 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 TMEM110Q86TL2 294 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 SLC4A5Q9BY07 1137 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 STOML1Q9UBI4 398 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 DNAJC16Q9Y2G8 782 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 MAP3K7O43318 606 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 PTPN7P35236 360 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 MAPRE2Q15555 327 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 PRPF39Q86UA1 669 aaKnown RBP14.8□□□□□ -0.04
TCOF1-202ENST00000377797 NIPA2Q8N8Q9 360 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 PCDH19Q8TAB3 1148 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 PRCCQ92733 491 aaPredicted RBP14.8□□□□□ -0.04
TCOF1-202ENST00000377797 SCLYQ96I15 445 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 FGD4Q96M96 766 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 MYCBPQ99417 103 aaPredicted RBP14.8□□□□□ -0.04
TCOF1-202ENST00000377797 ARHGAP39Q9C0H5 1083 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 TCRBV9S1A1TA0A576 114 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 SPTLC1O15269 473 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 CKBP12277 381 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 GRK2P25098 689 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 RPA3P35244 121 aaPredicted RBP14.8□□□□□ -0.04
TCOF1-202ENST00000377797 ITGA9Q13797 1035 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 CYP1B1Q16678 543 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 HS6ST3Q8IZP7 471 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 PGAP2Q9UHJ9 254 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 SLC25A13Q9UJS0 675 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 NOL3O60936 208 aaKnown RBP14.8□□□□□ -0.04
TCOF1-202ENST00000377797 CD86P42081 329 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 MAXP61244 160 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 SMAD3P84022 425 aaKnown RBP14.8□□□□□ -0.04
TCOF1-202ENST00000377797 HIC1Q14526 733 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 TPGS1Q6ZTW0 290 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 LRRC49Q8IUZ0 686 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 FUKQ8N0W3 1084 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 FIBCD1Q8N539 461 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 CERS2Q96G23 380 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 DPP7Q9UHL4 492 aa14.8□□□□□ -0.04
TCOF1-202ENST00000377797 TARSP26639 723 aaKnown RBP14.79□□□□□ -0.04
TCOF1-202ENST00000377797 SERPINH1P50454 418 aaKnown RBP14.79□□□□□ -0.04
TCOF1-202ENST00000377797 AQP5P55064 265 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 CORO7P57737 925 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 OGDHQ02218 1023 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 CA9Q16790 459 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 SYTL3Q4VX76 610 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 NEPROQ6NW34 567 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 CLEC20AQ6ZU45 233 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 LONP2Q86WA8 852 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 MFN1Q8IWA4 741 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 ATXN2LQ8WWM7 1075 aaKnown RBP14.79□□□□□ -0.04
TCOF1-202ENST00000377797 TMEM161AQ9NX61 479 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 CDYLQ9Y232 598 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 CARNS1A5YM72 827 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 ZNF865P0CJ78 1059 aaPredicted RBP14.79□□□□□ -0.04
TCOF1-202ENST00000377797 KCNA4P22459 653 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 MAP4P27816 1152 aaKnown RBP14.79□□□□□ -0.04
TCOF1-202ENST00000377797 INCA1Q0VD86 236 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 PDCD2Q16342 344 aaPredicted RBP14.79□□□□□ -0.04
TCOF1-202ENST00000377797 UNC5AQ6ZN44 842 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 IRGQQ8WZA9 623 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 R3HDMLQ9H3Y0 253 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 WDR70Q9NW82 654 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 GRHL1Q9NZI5 618 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 SKAP2O75563 359 aaPredicted RBP14.79□□□□□ -0.04
TCOF1-202ENST00000377797 LRIG2O94898 1065 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 TYMPP19971 482 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 SMARCB1Q12824 385 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 TAC4Q86UU9 113 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 NPAS4Q8IUM7 802 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 NSL1Q96IY1 281 aa14.79□□□□□ -0.04
TCOF1-202ENST00000377797 RMDN2Q96LZ7 410 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms